Mădălin Ionel Patrașcu wrote 3 years ago
(address . guix-patches@gnu.org)
20220627212824.18326-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-bader): New variable.
---
gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
Toggle diff (39 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..6d65cc1c1f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,30 @@ (define-public r-aneufinder
sequencing data.")
(license license:artistic2.0)))
+(define-public r-bader
+ (package
+ (name "r-bader")
+ (version "1.34.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BADER" version))
+ (sha256
+ (base32
+ "0i5x1r2ns1hxhqk5jyfqird81hck1hllvvgx5bn0rb5vl99g8spm"))))
+ (properties `((upstream-name . "BADER")))
+ (build-system r-build-system)
+ (home-page "https://bioconductor.org/packages/BADER")
+ (synopsis
+ "Bayesian analysis of differential expression in RNA sequencing data")
+ (description
+ "The @code{BADER} package is intended for the analysis of RNA sequencing
+data. The algorithm fits a Bayesian hierarchical model for RNA sequencing count
+data. @code{BADER} returns the posterior probability of differential expression
+for each gene between two groups A and B. The joint posterior distribution of
+the variables in the model can be returned in the form of posterior samples,
+which can be used for further down-stream analyses such as gene set enrichment.")
+ (license license:gpl2)))
+
(define-public r-biocversion
(package
(name "r-biocversion")
base-commit: 144a750f8b10e606751bc887bcb09e7fb7ae09ff
--
2.36.1