Mădălin Ionel Patrașcu wrote 3 years ago
(address . guix-patches@gnu.org)
20220627211620.17299-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-bac): New variable.
---
gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
Toggle diff (39 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..1e86f02128 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,30 @@ (define-public r-aneufinder
sequencing data.")
(license license:artistic2.0)))
+(define-public r-bac
+ (package
+ (name "r-bac")
+ (version "1.56.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BAC" version))
+ (sha256
+ (base32
+ "0dkw7438d2sf6nb577dnzija54qs0nhlr47lb73li60fhlnvqmh2"))))
+ (properties `((upstream-name . "BAC")))
+ (build-system r-build-system)
+ (home-page "https://bioconductor.org/packages/BAC")
+ (synopsis "Bayesian analysis of Chip-chip experiment")
+ (description
+ "This package uses a Bayesian hierarchical model to detect enriched regions
+from ChIP-chip experiments. The common goal in analyzing this ChIP-chip data is
+to detect DNA-protein interactions from ChIP-chip experiments. The @code{BAC}
+package has mainly been tested with @code{Affymetrix} tiling array data. However,
+we expect it to work with other platforms (e.g. Agilent, Nimblegen, cDNA, etc.).
+Note that @code{BAC} does not deal with normalization, so you will have to
+normalize your data before hands.")
+ (license license:artistic2.0)))
+
(define-public r-biocversion
(package
(name "r-biocversion")
base-commit: 144a750f8b10e606751bc887bcb09e7fb7ae09ff
--
2.36.1