Mădălin Ionel Patrașcu wrote 3 years ago
(address . guix-patches@gnu.org)
20220623124454.28787-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-awst): New variable.
---
gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
Toggle diff (41 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..fa9c728a44 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,32 @@ (define-public r-aneufinder
sequencing data.")
(license license:artistic2.0)))
+(define-public r-awst
+ (package
+ (name "r-awst")
+ (version "1.4.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "awst" version))
+ (sha256
+ (base32
+ "0iw3zycmj95rmdx7f2w0j4yxkzd90y87lrzgdn9cyvvzi5avflav"))))
+ (properties `((upstream-name . "awst")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/drisso/awst")
+ (synopsis "Asymmetric within-sample transformation")
+ (description
+ "This package @dfn{awst} (Asymmetric Within-Sample Transformation) that
+regularizes RNA-seq read counts and reduces the effect of noise on the
+classification of samples. @code{AWST} comprises two main steps: standardization
+and smoothing. These steps transform gene expression data to reduce the noise
+of the lowly expressed features, which suffer from background effects and low
+signal-to-noise ratio, and the influence of the highly expressed features, which
+may be the result of amplification bias and other experimental artifacts.")
+ (license license:expat)))
+
(define-public r-biocversion
(package
(name "r-biocversion")
base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9
--
2.36.1