Mădălin Ionel Patrașcu wrote 3 years ago
(address . guix-patches@gnu.org)
20220623115442.26983-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-attract): New variable.
---
gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
Toggle diff (46 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..dcc9503a1b 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,37 @@ (define-public r-aneufinder
sequencing data.")
(license license:artistic2.0)))
+(define-public r-attract
+ (package
+ (name "r-attract")
+ (version "1.48.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "attract" version))
+ (sha256
+ (base32
+ "0f1fsv278kpnxvqg9qa5rw2k3zr8zws0ab73ldl60h6pv9cy8x82"))))
+ (properties `((upstream-name . "attract")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-annotationdbi
+ r-biobase
+ r-cluster
+ r-gostats
+ r-keggrest
+ r-limma
+ r-org-hs-eg-db
+ r-reactome-db))
+ (home-page "https://bioconductor.org/packages/attract")
+ (synopsis "Finding drivers of Kauffman's attractor landscape")
+ (description
+ "This package contains the functions to find the gene expression modules
+that represent the drivers of Kauffman's attractor landscape. The modules are
+the core attractor pathways that discriminate between different cell types of
+groups of interest. Each pathway has a set of synexpression groups, which show
+transcriptionally-coordinated changes in gene expression.")
+ (license license:lgpl2.0+)))
+
(define-public r-biocversion
(package
(name "r-biocversion")
base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9
--
2.36.1