Mădălin Ionel Patrașcu wrote 3 years ago
(address . guix-patches@gnu.org)
20220623100244.22801-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-asset): New variable.
---
gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
Toggle diff (41 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..98e7ee104d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,32 @@ (define-public r-aneufinder
sequencing data.")
(license license:artistic2.0)))
+(define-public r-asset
+ (package
+ (name "r-asset")
+ (version "2.14.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ASSET" version))
+ (sha256
+ (base32
+ "029acl5k9d4hnvy3jia9cr4rk6w31zn8b5s79i6lazq1cp236hbg"))))
+ (properties `((upstream-name . "ASSET")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-mass r-msm r-rmeta))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/ASSET")
+ (synopsis
+ "Subset-based association analysis of heterogeneous traits and subtypes")
+ (description
+ "This package is an @code{R} programme for the subset-based analysis of
+heterogeneous traits and disease subtypes. @code{ASSET} allows the user to
+search through all possible subsets of z-scores to identify the subset of traits
+giving the best meta-analyzed z-score. Further, it returns a p-value adjusting
+for the multiple-testing involved in the search. It also allows for searching
+for the best combination of disease subtypes associated with each variant.")
+ (license license:gpl2)))
+
(define-public r-biocversion
(package
(name "r-biocversion")
base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9
--
2.36.1