Mădălin Ionel Patrașcu wrote 3 years ago
(address . guix-patches@gnu.org)
20220623094257.21985-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-assessorf): New variable.
---
gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
Toggle diff (44 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..3f7743b0cb 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,35 @@ (define-public r-aneufinder
sequencing data.")
(license license:artistic2.0)))
+(define-public r-assessorf
+ (package
+ (name "r-assessorf")
+ (version "1.14.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AssessORF" version))
+ (sha256
+ (base32
+ "1l87bpny9k3jbzbzmb9h2ijvblrj471gqv26fyzbvb3vr6y406z7"))))
+ (properties `((upstream-name . "AssessORF")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biostrings
+ r-decipher
+ r-genomicranges
+ r-iranges))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/AssessORF")
+ (synopsis "Assess gene predictions using proteomics and evolutionary conservation")
+ (description
+ "In order to assess the quality of a set of predicted genes for a genome,
+evidence must first be mapped to that genome. Next, each gene must be categorized
+based on how strong the evidence is for or against that gene. The @code{AssessORF}
+package provides the functions and class structures necessary for accomplishing
+those tasks, using proteomics hits and evolutionarily conserved start codons as
+the forms of evidence.")
+ (license license:gpl3)))
+
(define-public r-biocversion
(package
(name "r-biocversion")
base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9
--
2.36.1