Mădălin Ionel Patrașcu wrote 3 years ago
(address . guix-patches@gnu.org)
20220622144612.19605-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-aspli): New variable.
---
gnu/packages/bioconductor.scm | 48 +++++++++++++++++++++++++++++++++++
1 file changed, 48 insertions(+)
Toggle diff (63 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..0136d268b3 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,54 @@ (define-public r-aneufinder
sequencing data.")
(license license:artistic2.0)))
+(define-public r-aspli
+ (package
+ (name "r-aspli")
+ (version "2.6.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ASpli" version))
+ (sha256
+ (base32
+ "1frlcwa8m4imfx6ncav8r8yskyaf4ibha177mfnp9y84w6mphynz"))))
+ (properties `((upstream-name . "ASpli")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-annotationdbi
+ r-biocgenerics
+ r-biocstyle
+ r-data-table
+ r-dt
+ r-edger
+ r-genomicalignments
+ r-genomicfeatures
+ r-genomicranges
+ r-gviz
+ r-htmltools
+ r-igraph
+ r-iranges
+ r-limma
+ r-mass
+ r-pbmcapply
+ r-rsamtools
+ r-s4vectors
+ r-tidyr
+ r-upsetr))
+ (home-page "https://bioconductor.org/packages/ASpli")
+ (synopsis "Analysis of alternative splicing using RNA-Seq")
+ (description
+ "@dfn{AS} (alternative splicing) is a common mechanism of post-transcriptional
+gene regulation in eukaryotic organisms that expands the functional and regulatory
+diversity of a single gene by generating multiple mRNA isoforms that encode
+structurally and functionally distinct proteins. @code{ASpli} is an integrative
+pipeline and user-friendly @code{R} package that facilitates the analysis of changes
+in both annotated and novel AS events. @code{ASpli} integrates several independent
+signals in order to deal with the complexity that might arise in splicing
+patterns.")
+ ;; The authors didn't specify any GPL version in description or in the
+ ;; sources.
+ (license (list license:gpl2+ license:gpl3+))))
+
(define-public r-biocversion
(package
(name "r-biocversion")
base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9
--
2.36.1