Mădălin Ionel Patrașcu wrote 3 years ago
(address . guix-patches@gnu.org)
20220622135741.16618-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-aseb): New variable.
---
gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
Toggle diff (41 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..f961d201d2 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,32 @@ (define-public r-aneufinder
sequencing data.")
(license license:artistic2.0)))
+(define-public r-aseb
+ (package
+ (name "r-aseb")
+ (version "1.40.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ASEB" version))
+ (sha256
+ (base32
+ "1i0r4vimk6is4j4rr14ajp8papznpmmr0bhwd96s8w53cqdqph7p"))))
+ (properties `((upstream-name . "ASEB")))
+ (build-system r-build-system)
+ (home-page "https://bioconductor.org/packages/ASEB")
+ (synopsis "Predict acetylated lysine sites")
+ (description
+ "@code{ASEB} is an R package to predict lysine sites that can be acetylated
+by a specific @dfn{KAT}-family (K-acetyl-transferases). Lysine acetylation is
+a well-studied posttranslational modification on kinds of proteins. About four
+thousand lysine acetylation sites and over 20 lysine KATs have been identified.
+However, which KAT is responsible for a given protein or lysine site acetylation
+is mostly unknown. In this package, we use a @dfn{GSEA}-like (Gene Set Enrichment
+Analysis) method to make predictions. GSEA method was developed and successfully
+used to detect coordinated expression changes and find the putative functions
+of the long non-coding RNAs.")
+ (license license:gpl3+)))
+
(define-public r-biocversion
(package
(name "r-biocversion")
base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9
--
2.36.1