Mădălin Ionel Patrașcu wrote 3 years ago
(address . guix-patches@gnu.org)
20220622134533.15458-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-asafe): New variable.
---
gnu/packages/bioconductor.scm | 22 ++++++++++++++++++++++
1 file changed, 22 insertions(+)
Toggle diff (37 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..2d199a79f2 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,28 @@ (define-public r-aneufinder
sequencing data.")
(license license:artistic2.0)))
+(define-public r-asafe
+ (package
+ (name "r-asafe")
+ (version "1.22.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ASAFE" version))
+ (sha256
+ (base32
+ "1l9iqw2imr6w2gwqrmg05jp6lj2xc7hbyhd144d4q8vw8z7ga4ns"))))
+ (properties `((upstream-name . "ASAFE")))
+ (build-system r-build-system)
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/ASAFE")
+ (synopsis "Ancestry Specific Allele Frequency Estimation")
+ (description
+ "The @code{ASAFE} package contains a collection of functions that can be used
+to carry out an @dfn{EM} (Expectation–maximization) algorithm to estimate ancestry
+-specific allele frequencies for a bi-allelic genetic marker, e.g. an @dfn{SNP}
+(single nucleotide polymorphism) from genotypes and ancestry pairs.")
+ (license license:artistic2.0)))
+
(define-public r-biocversion
(package
(name "r-biocversion")
base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9
--
2.36.1