Mădălin Ionel Patrașcu wrote 3 years ago
(address . guix-patches@gnu.org)
20220619223346.26238-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-arrayexpress): New variable.
---
gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
Toggle diff (40 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..af486561e0 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,31 @@ (define-public r-aneufinder
sequencing data.")
(license license:artistic2.0)))
+(define-public r-arrayexpress
+ (package
+ (name "r-arrayexpress")
+ (version "1.56.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ArrayExpress" version))
+ (sha256
+ (base32
+ "0v2v7v0gim0bsg34ciplapz6mjih68yqhcgzdlhcyj2d6vrgiad5"))))
+ (properties `((upstream-name . "ArrayExpress")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biobase
+ r-limma
+ r-oligo
+ r-xml))
+ (home-page "https://bioconductor.org/packages/ArrayExpress")
+ (synopsis "Building R objects from ArrayExpress datasets")
+ (description
+ "This package offers the possibility to access the ArrayExpress repository
+at @dfn{EBI} (European Bioinformatics Institute) and build Bioconductor data
+structures: @code{ExpressionSet}, @code{AffyBatch}, @code{NChannelSet}.")
+ (license license:artistic2.0)))
+
(define-public r-biocversion
(package
(name "r-biocversion")
base-commit: 73761d8049f483e6685c2c736872d0366e03238a
--
2.36.1