[PATCH] gnu: Add r-arrayexpress.

Mădălin Ionel Patrașcu wrote on 20 Jun 00:33 +0200

Recipients:(address . guix-patches@gnu.org)

Message-ID:20220619223346.26238-1-madalinionel.patrascu@mdc-berlin.de

* gnu/packages/bioconductor.scm (r-arrayexpress): New variable.

---

gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++

1 file changed, 25 insertions(+)

Toggle diff (40 lines)diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..af486561e0 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,31 @@ (define-public r-aneufinder
 sequencing data.")
     (license license:artistic2.0)))
 
+(define-public r-arrayexpress
+  (package
+    (name "r-arrayexpress")
+    (version "1.56.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "ArrayExpress" version))
+              (sha256
+               (base32
+                "0v2v7v0gim0bsg34ciplapz6mjih68yqhcgzdlhcyj2d6vrgiad5"))))
+    (properties `((upstream-name . "ArrayExpress")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-biobase
+           r-limma
+           r-oligo
+           r-xml))
+    (home-page "https://bioconductor.org/packages/ArrayExpress")
+    (synopsis "Building R objects from ArrayExpress datasets")
+    (description
+     "This package offers the possibility to access the ArrayExpress repository
+at @dfn{EBI} (European Bioinformatics Institute) and build Bioconductor data
+structures: @code{ExpressionSet}, @code{AffyBatch}, @code{NChannelSet}.")
+    (license license:artistic2.0)))
+
 (define-public r-biocversion
   (package
     (name "r-biocversion")

base-commit: 73761d8049f483e6685c2c736872d0366e03238a
-- 
2.36.1