Mădălin Ionel Patrașcu wrote 3 years ago
(address . guix-patches@gnu.org)
20220617140558.10555-1-madalinionel.patrascu@mdc-berlin.de
Toggle diff (49 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..5b74118974 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,40 @@ (define-public r-aneufinder
sequencing data.")
(license license:artistic2.0)))
+(define-public r-annmap
+ (package
+ (name "r-annmap")
+ (version "1.38.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "annmap" version))
+ (sha256
+ (base32
+ "0ywqbb8jia7rrkzcsf6a11kqf8dnx96z8n8xw7067mahycykbixv"))))
+ (properties `((upstream-name . "annmap")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biobase
+ r-biocgenerics
+ r-dbi
+ r-digest
+ r-genefilter
+ r-genomicranges
+ r-iranges
+ r-lattice
+ r-rmysql
+ r-rsamtools))
+ (home-page "https://github.com/cruk-mi/annmap")
+ (synopsis
+ "Genome annotation and visualisation for Affymetrix arrays and NGS analysis")
+ (description
+ "This package @code{annmap} provides annotation mappings for Affymetrix exon
+arrays and coordinate based queries to support deep sequencing data analysis.
+Database access is hidden behind the API which provides a set of functions such
+as @code{genesInRange()}, @code{geneToExon()}, @code{exonDetails()}, etc.
+Functions to plot gene architecture and BAM file data are also provided.")
+ (license license:gpl2)))
+
(define-public r-biocversion
(package
(name "r-biocversion")
base-commit: d6bd483cd53cedc8da39fcc6c419f7241080ed21
--
2.36.1