Mădălin Ionel Patrașcu wrote 3 years ago
(address . guix-patches@gnu.org)
20220617090920.32056-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-amountain): New variable.
---
gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
Toggle diff (39 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..4fc7949c75 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1987,6 +1987,30 @@ (define-public r-agimicrorna
objects are used so that other packages could be used as well.")
(license license:gpl3)))
+(define-public r-amountain
+ (package
+ (name "r-amountain")
+ (version "1.22.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AMOUNTAIN" version))
+ (sha256
+ (base32
+ "0vdfabsrisdd7qq28f5ivd0v8zz49szqn677i5lhwnlaix220c54"))))
+ (properties `((upstream-name . "AMOUNTAIN")))
+ (build-system r-build-system)
+ (inputs (list gsl))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/AMOUNTAIN")
+ (synopsis "Modules for multilayer weighted gene co-expression networks")
+ (description
+ "This package provides a pure data-driven gene network, @dfn{WGCN}(weighted
+gene co-expression network) could be constructed only from expression profile.
+Different layers in such networks may represent different time points, multiple
+conditions or various species. @code{AMOUNTAIN} aims to search active modules
+in multi-layer WGCN using a continuous optimization approach.")
+ (license license:gpl2+)))
+
(define-public r-aneufinder
(package
(name "r-aneufinder")
base-commit: ef2d908e22f9d4f4a89782766b67d425935ae4eb
--
2.36.1