(address . guix-patches@gnu.org)
20220616163502.27554-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-alphabeta): New variable.
---
gnu/packages/bioconductor.scm | 40 +++++++++++++++++++++++++++++++++++
1 file changed, 40 insertions(+)
Toggle diff (55 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..cd9923a946 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1987,6 +1987,46 @@ (define-public r-agimicrorna
objects are used so that other packages could be used as well.")
(license license:gpl3)))
+(define-public r-alphabeta
+ (package
+ (name "r-alphabeta")
+ (version "1.10.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AlphaBeta" version))
+ (sha256
+ (base32
+ "1ikdrigma02gnl6ggrc89bjsiqmd7knpb9kw7nqyrdnv3qjd9iag"))))
+ (properties `((upstream-name . "AlphaBeta")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biocparallel
+ r-data-table
+ r-dplyr
+ r-expm
+ r-ggplot2
+ r-gtools
+ r-igraph
+ r-optimx
+ r-plotly
+ r-stringr))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/AlphaBeta")
+ (synopsis
+ "Estimating epimutation rates and spectra from DNA methylations in plants")
+ (description
+ "The package @code{AlphaBeta} is a computational method for estimating
+epimutation rates and spectra from high-throughput DNA methylation data in plants.
+The method has been specifically designed to:
+@itemize
+@item
+analyze @emph{germline} epimutations in the context of multi-generational mutation
+accumulation lines;
+@item
+analyze @emph{somatic} epimutations in the context of plant development and aging.
+@end itemize")
+ (license license:gpl3)))
+
(define-public r-aneufinder
(package
(name "r-aneufinder")
base-commit: ef2d908e22f9d4f4a89782766b67d425935ae4eb
--
2.36.1