[PATCH] gnu: Add r-alevinqc.

OpenSubmitted by Mădălin Ionel Patrașcu.
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  • Mădălin Ionel Patrașcu
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Mădălin Ionel Patrașcu wrote on 16 Jun 18:16 +0200
(address . guix-patches@gnu.org)
20220616161650.25148-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-alevinqc): New variable.
---
gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++
1 file changed, 34 insertions(+)

Toggle diff (49 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..f5057ff362 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1987,6 +1987,40 @@ (define-public r-agimicrorna
 objects are used so that other packages could be used as well.")
     (license license:gpl3)))
 
+(define-public r-alevinqc
+  (package
+    (name "r-alevinqc")
+    (version "1.12.1")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "alevinQC" version))
+              (sha256
+               (base32
+                "0g75qnz7ah0widdjn99lhvnacz38vgl9j86n65wyswsf413hz3bb"))))
+    (properties `((upstream-name . "alevinQC")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-cowplot
+           r-dplyr
+           r-dt
+           r-ggally
+           r-ggplot2
+           r-rcpp
+           r-rjson
+           r-rlang
+           r-rmarkdown
+           r-shiny
+           r-shinydashboard
+           r-tximport))
+    (native-inputs (list r-knitr))
+    (home-page "https://github.com/csoneson/alevinQC")
+    (synopsis "Quality control reports for @code{Alevin} output")
+    (description
+     "The package @code{r-alevinqc} generates quality control reports summarizing
+the output from an @code{alevin} run.  The reports can be generated as html or
+pdf files, or as shiny applications.")
+    (license license:expat)))
+
 (define-public r-aneufinder
   (package
     (name "r-aneufinder")

base-commit: ef2d908e22f9d4f4a89782766b67d425935ae4eb
-- 
2.36.1
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