Mădălin Ionel Patrașcu wrote 3 years ago
(address . guix-patches@gnu.org)
20220502094955.32309-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-aims): New variable.
---
gnu/packages/bioconductor.scm | 23 +++++++++++++++++++++++
1 file changed, 23 insertions(+)
Toggle diff (38 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a78903becc..17fa746fae 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1877,6 +1877,29 @@ (define-public r-agilp
;; GPLv3.
(license license:gpl3)))
+(define-public r-aims
+ (package
+ (name "r-aims")
+ (version "1.28.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AIMS" version))
+ (sha256
+ (base32
+ "1z7yzaizyzcv556w8880603nd947k0d6raadjm42mdl66mma0cdx"))))
+ (properties `((upstream-name . "AIMS")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-biobase r-e1071))
+ (home-page "https://git.bioconductor.org/packages/AIMS")
+ (synopsis
+ "Absolute assignment of breast cancer intrinsic molecular subtype")
+ (description
+ "This package contains the @code{AIMS} implementation. It contains
+necessary functions to assign the five intrinsic molecular subtypes (Luminal A,
+Luminal B, Her2-enriched, Basal-like, Normal-like). Assignments could be done
+on individual samples as well as on dataset of gene expression data.")
+ (license license:artistic2.0)))
+
(define-public r-aneufinder
(package
(name "r-aneufinder")
base-commit: 098f2eea331121905e3c867f478b22cea3510841
--
2.36.0