[PATCH] gnu: Add r-agimicrorna.

DoneSubmitted by Mădălin Ionel Patrașcu.
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  • Mădălin Ionel Patrașcu
  • Ricardo Wurmus
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Mădălin Ionel Patrașcu wrote on 2 May 11:37 +0200
(address . guix-patches@gnu.org)
20220502093734.30444-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-agimicrorna): New variable.
---
gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)

Toggle diff (45 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a78903becc..78075de4e0 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1877,6 +1877,36 @@ (define-public r-agilp
     ;; GPLv3.
     (license license:gpl3)))
 
+(define-public r-agimicrorna
+  (package
+    (name "r-agimicrorna")
+    (version "2.46.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "AgiMicroRna" version))
+              (sha256
+               (base32
+                "0jic89gyphbv7jzlfgm9bh1aq48lp86rq6hr34gsg9z0pa1192xa"))))
+    (properties `((upstream-name . "AgiMicroRna")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-affy
+           r-affycoretools
+           r-biobase
+           r-limma
+           r-preprocesscore))
+    (home-page "https://git.bioconductor.org/packages/AgiMicroRna")
+    (synopsis
+     "Processing and differential expression analysis of Agilent microRNA chips")
+    (description
+     "@code{AgiMicroRna} provides useful functionality for the processing, quality
+assessment and differential expression analysis of Agilent microRNA array data.
+The package uses a limma-like structure to generate the processed data in order
+to make statistical inferences about differential expression using the linear
+model features implemented in limma.  Standard Bioconductor objects are used so
+that other packages could be used as well.")
+    (license license:gpl3)))
+
 (define-public r-aneufinder
   (package
     (name "r-aneufinder")

base-commit: 098f2eea331121905e3c867f478b22cea3510841
-- 
2.36.0
R
R
Ricardo Wurmus wrote on 2 May 16:54 +0200
(name . Mădălin Ionel Patrașcu)(address . madalinionel.patrascu@mdc-berlin.de)
878rrkx9vx.fsf@elephly.net
Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:

Toggle quote (2 lines)
> * gnu/packages/bioconductor.scm (r-agimicrorna): New variable.

Applied, thanks.

--
Ricardo
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