Mădălin Ionel Patrașcu wrote 3 years ago
(address . guix-patches@gnu.org)
20220427112014.25581-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-agdex): New variable.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
Toggle diff (42 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 67ee6079c6..1de7f83845 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1664,6 +1664,33 @@ (define-public r-adamgui
the @code{GFAGpathUi} function.")
(license license:gpl2+)))
+(define-public r-agdex
+ (package
+ (name "r-agdex")
+ (version "1.42.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AGDEX" version))
+ (sha256
+ (base32
+ "0y0q4zdybr5hlsi7qy2hf6c2sqr2z2211wz36dz70jkqyr0ggw64"))))
+ (properties `((upstream-name . "AGDEX")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-biobase r-gseabase))
+ (home-page "https://bioconductor.org/packages/AGDEX")
+ (synopsis
+ "Evaluate agreement of differential expression for cross-species genomics")
+ (description
+ "The objective of @code{AGDEX} is to evaluate whether the results of a pair
+of two-group differential expression analysis comparisons show a level of
+agreement that is greater than expected if the group labels for each two-group
+comparison are randomly assigned. The agreement is evaluated for the entire
+transcriptome and (optionally) for a collection of pre-defined gene-sets.
+Additionally, the procedure performs permutation-based differential expression
+and meta analysis at both gene and gene-set levels of the data from each
+experiment.")
+ (license license:gpl2+)))
+
(define-public r-aneufinder
(package
(name "r-aneufinder")
base-commit: 4fb6ef6636acd7608889639c1b2e492517256f76
--
2.34.0