[PATCH] gnu: Add r-affyrnadegradation.

DoneSubmitted by Mădălin Ionel Patrașcu.
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  • Mădălin Ionel Patrașcu
  • Ricardo Wurmus
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Mădălin Ionel Patrașcu wrote on 27 Apr 12:56 +0200
(address . guix-patches@gnu.org)
20220427105614.24849-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-affyrnadegradation): New variable.
---
gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)

Toggle diff (40 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 67ee6079c6..82aaf547a7 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1664,6 +1664,31 @@ (define-public r-adamgui
 the @code{GFAGpathUi} function.")
     (license license:gpl2+)))
 
+(define-public r-affyrnadegradation
+  (package
+    (name "r-affyrnadegradation")
+    (version "1.40.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "AffyRNADegradation" version))
+              (sha256
+               (base32
+                "00hzr62xn1i1w4g8krsxhivzwn8hd7hwhkdxyrpz6cs9vgr4x9kd"))))
+    (properties `((upstream-name . "AffyRNADegradation")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-affy))
+    (home-page "https://bioconductor.org/packages/AffyRNADegradation")
+    (synopsis
+     "Analyze and correct probe positional bias in data due to RNA degradation")
+    (description
+     "The @code{AffyRNADegradation} package helps with the assessment and
+correction of RNA degradation effects in Affymetrix 3' expression arrays.  The
+parameter @code{d} gives a robust and accurate measure of RNA integrity.  The
+correction removes the probe positional bias, and thus improves comparability
+of samples that are affected by RNA degradation.")
+    ;; the R file header specifies GPL2 or later
+    (license license:gpl2+)))
+
 (define-public r-aneufinder
   (package
     (name "r-aneufinder")

base-commit: 4fb6ef6636acd7608889639c1b2e492517256f76
-- 
2.34.0
R
R
Ricardo Wurmus wrote on 27 Apr 16:21 +0200
(name . Mădălin Ionel Patrașcu)(address . madalinionel.patrascu@mdc-berlin.de)(address . 55144-done@debbugs.gnu.org)
87fsly4nfn.fsf@elephly.net
Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:

Toggle quote (2 lines)
> * gnu/packages/bioconductor.scm (r-affyrnadegradation): New variable.

Applied, thanks!

--
Ricardo
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