Mădălin Ionel Patrașcu wrote 3 years ago
(address . guix-patches@gnu.org)
20220427105614.24849-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-affyrnadegradation): New variable.
---
gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
Toggle diff (40 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 67ee6079c6..82aaf547a7 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1664,6 +1664,31 @@ (define-public r-adamgui
the @code{GFAGpathUi} function.")
(license license:gpl2+)))
+(define-public r-affyrnadegradation
+ (package
+ (name "r-affyrnadegradation")
+ (version "1.40.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AffyRNADegradation" version))
+ (sha256
+ (base32
+ "00hzr62xn1i1w4g8krsxhivzwn8hd7hwhkdxyrpz6cs9vgr4x9kd"))))
+ (properties `((upstream-name . "AffyRNADegradation")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-affy))
+ (home-page "https://bioconductor.org/packages/AffyRNADegradation")
+ (synopsis
+ "Analyze and correct probe positional bias in data due to RNA degradation")
+ (description
+ "The @code{AffyRNADegradation} package helps with the assessment and
+correction of RNA degradation effects in Affymetrix 3' expression arrays. The
+parameter @code{d} gives a robust and accurate measure of RNA integrity. The
+correction removes the probe positional bias, and thus improves comparability
+of samples that are affected by RNA degradation.")
+ ;; the R file header specifies GPL2 or later
+ (license license:gpl2+)))
+
(define-public r-aneufinder
(package
(name "r-aneufinder")
base-commit: 4fb6ef6636acd7608889639c1b2e492517256f76
--
2.34.0