Mădălin Ionel Patrașcu wrote 3 years ago
(address . guix-patches@gnu.org)
20220426152455.17387-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-affixcan): New variable.
---
gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
Toggle diff (40 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index fa862d736f..925ebcdbdc 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1616,6 +1616,31 @@ (define-public r-adam
functionally associated genes} (GFAG).")
(license license:gpl2+)))
+(define-public r-affixcan
+ (package
+ (name "r-affixcan")
+ (version "1.12.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AffiXcan" version))
+ (sha256
+ (base32
+ "06yn87briv2141jqad934gg5rcd90w5nghrgmbhqnmwafn72gj9d"))))
+ (properties `((upstream-name . "AffiXcan")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-biocparallel r-crayon r-multiassayexperiment
+ r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/AffiXcan")
+ (synopsis "Functional approach to impute genetically regulated expression")
+ (description
+ "The @code{AffiXcan} package imputes a @dfn{Genetically regulated
+expression} (GReX) for a set of genes in a sample of individuals, using a method
+based on the @dfn{total binding affinity} (TBA). Statistical models to impute
+GReX can be trained with a training dataset where the real total expression
+values are known.")
+ (license license:gpl3)))
+
(define-public r-aneufinder
(package
(name "r-aneufinder")
base-commit: 30ff557bd7255dddec16f4a032e58f5a88d5e448
--
2.34.0