Mădălin Ionel Patrașcu wrote 3 years ago
(address . guix-patches@gnu.org)
20220417081343.29275-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-adam): New variable.
---
gnu/packages/bioconductor.scm | 35 +++++++++++++++++++++++++++++++++++
1 file changed, 35 insertions(+)
Toggle diff (50 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index bec3496057..cd28d3eb20 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1581,6 +1581,41 @@ (define-public r-absseq
ranking by fold-change and visualization.")
(license license:gpl3+)))
+(define-public r-adam
+ (package
+ (name "r-adam")
+ (version "1.10.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ADAM" version))
+ (sha256
+ (base32
+ "18zwci0ab54q7rdwj0n63w0i14lfrb4cccp09bcrq10gl1ki07f5"))))
+ (properties `((upstream-name . "ADAM")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-dplyr
+ r-dt
+ r-go-db
+ r-keggrest
+ r-knitr
+ r-pbapply
+ r-rcpp
+ r-stringr
+ r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/ADAM")
+ (synopsis "Gene activity and diversity analysis module")
+ (description
+ "This software @code{ADAM} is a @dfn{Gene set enrichment analysis} (GSEA)
+package created to group a set of genes from comparative samples (control
+versus experiment) belonging to different species according to their respective
+functions. The corresponding roles are extracted from the default collections
+like Gene ontology and @dfn{Kyoto encyclopedia of genes and genomes} (KEGG).
+@code{ADAM} show their significance by calculating the p-values referring to
+gene diversity and activity. Each group of genes is called @dfn{Group of
+functionally associated genes} (GFAG).")
+ (license license:gpl2+)))
+
(define-public r-aneufinder
(package
(name "r-aneufinder")
base-commit: 0c89fe9e17dc9e628c73959289464ac5f146c7cd
--
2.34.0