Mădălin Ionel Patrașcu wrote 3 years ago
(address . guix-patches@gnu.org)
20220413141258.30929-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-acme): New variable.
---
gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
Toggle diff (43 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 803437a033..69e9e14dd3 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -11642,6 +11642,36 @@ (define-public r-universalmotif
motifs, and others.")
(license license:gpl3)))
+;; The homepage (http://watson.nci.nih.gov/~sdavis) seems to be inaccessible
+;; anymore so I changed it to the Bioconductor page of the package.
+(define-public r-acme
+ (package
+ (name "r-acme")
+ (version "2.50.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ACME" version))
+ (sha256
+ (base32
+ "0h4bqbbqcwc938q7lysk5l35f64xz9d1bsniv2wshmlr4rr0zpcg"))))
+ (properties `((upstream-name . "ACME")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-biobase r-biocgenerics))
+ (home-page "https://bioconductor.org/packages/aCGH/")
+ (synopsis "Calculating microarray enrichment")
+ (description
+ "This package implements
+@dfn{algorithms for calculating microarray enrichment} (ACME), and it is a set
+of tools for analysing tiling array of
+@dfn{combined chromatin immunoprecipitation with DNA microarray} (ChIP/chip),
+DNAse hypersensitivity, or other experiments that result in regions of the
+genome showing enrichment. It does not rely on a specific array technology
+(although the array should be a tiling array), is very general (can be applied
+in experiments resulting in regions of enrichment), and is very insensitive to
+array noise or normalization methods. It is also very fast and can be applied
+on whole-genome tiling array experiments quite easily with enough memory.")
+ (license license:gpl2+)))
+
;; This is a CRAN package, but it depends on Bioconductor packages, so we put
;; it here.
(define-public r-activedriverwgs
--
2.34.0