Mădălin Ionel Patrașcu wrote 3 years ago
(address . guix-patches@gnu.org)
20220413112103.26787-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.18.1.
[description]: Add Texinfo markups and clarify a sentence.
---
gnu/packages/bioconductor.scm | 31 +++++++++++++++++++------------
1 file changed, 19 insertions(+), 12 deletions(-)
Toggle diff (57 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 803437a033..d57a09f39d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -13786,14 +13786,14 @@ (define-public r-msmstests
(define-public r-catalyst
(package
(name "r-catalyst")
- (version "1.18.0")
+ (version "1.18.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "CATALYST" version))
(sha256
(base32
- "15lah45lf16zh1ankbpjvz8zp38lldvq074nmvb99rhhqys2gbgi"))))
+ "0dvcs7nz1yawcrsf9lqiwdcrvjmbs8ajrmvj0ji4qq2a86n3dkg0"))))
(properties `((upstream-name . "CATALYST")))
(build-system r-build-system)
(propagated-inputs
@@ -13829,16 +13829,23 @@ (define-public r-catalyst
"https://github.com/HelenaLC/CATALYST")
(synopsis "Cytometry data analysis tools")
(description
- "This package is Cytometry dATa anALYSis Tools (CATALYST). Mass
-cytometry (CyTOF) uses heavy metal isotopes rather than fluorescent tags as
-reporters to label antibodies, thereby substantially decreasing spectral
-overlap and allowing for examination of over 50 parameters at the single cell
-level. While spectral overlap is significantly less pronounced in CyTOF than
-flow cytometry, spillover due to detection sensitivity, isotopic impurities,
-and oxide formation can impede data interpretability. We designed
-CATALYST (Cytometry dATa anALYSis Tools) to provide a pipeline for
-preprocessing of cytometry data, including i) normalization using bead
-standards, ii) single-cell deconvolution, and iii) bead-based compensation.")
+ "This package is @dfn{Cytometry dATa anALYSis Tools} (CATALYST). Mass
+cytometry like @dfn{Cytometry by time of flight} (CyTOF) uses heavy metal
+isotopes rather than fluorescent tags as reporters to label antibodies, thereby
+substantially decreasing spectral overlap and allowing for examination of over
+50 parameters at the single cell level. While spectral overlap is
+significantly less pronounced in CyTOF than flow cytometry, spillover due to
+detection sensitivity, isotopic impurities, and oxide formation can impede data
+interpretability. We designed @code{CATALYST} to provide a pipeline for
+preprocessing of cytometry data, including:
+@enumerate
+@item
+normalization using bead standards;
+@item
+single-cell deconvolution;
+@item
+bead-based compensation.
+@end enumerate")
(license license:gpl2+)))
(define-public r-erma
--
2.34.0