Mădălin Ionel Patrașcu wrote 3 years ago
(address . guix-patches@gnu.org)
20220323102408.5337-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioinformatics.scm (r-signac): Update to 1.6.0.
[propagated-inputs]: Remove AnnotationFilter, BiocGenerics,
Biostrings, biovizBase and ggbio.
[propagated-inputs]: Add qlcMatrix and tidyselect.
---
gnu/packages/bioinformatics.scm | 19 ++++++++-----------
1 file changed, 8 insertions(+), 11 deletions(-)
Toggle diff (66 lines)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ada5965e5f..67793904f0 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -15275,11 +15275,11 @@ (define-public ensembl-vep
(license license:asl2.0))))
(define-public r-signac
- (let ((commit "e0512d348adeda4a3f23a2e8f56d1fe09840e03c")
- (revision "1"))
+ (let ((commit "458e647b503c3472b0b98c0aeca934f452e039ee")
+ (revision "2"))
(package
(name "r-signac")
- (version (git-version "1.1.1" revision commit))
+ (version (git-version "1.6.0" revision commit))
(source
(origin
(method git-fetch)
@@ -15288,16 +15288,12 @@ (define-public r-signac
(commit commit)))
(file-name (git-file-name name version))
(sha256
- (base32
- "1yihhrv7zs87ax61la1nb4y12lg3knraw4b20k5digbcwm8488lb"))))
+ (base32 "1hgwpgighkvfkai80n4d2252s4sdpa4faag4ncdiylicl5wa7lbj"))))
(properties `((upstream-name . "Signac")))
(build-system r-build-system)
(inputs (list zlib))
(propagated-inputs
- (list r-annotationfilter
- r-biocgenerics
- r-biostrings
- r-biovizbase
+ (list r-biocgenerics
r-data-table
r-dplyr
r-fastmatch
@@ -15305,7 +15301,6 @@ (define-public r-signac
r-future-apply
r-genomeinfodb
r-genomicranges
- r-ggbio
r-ggforce
r-ggplot2
r-ggrepel
@@ -15316,6 +15311,7 @@ (define-public r-signac
r-matrix
r-patchwork
r-pbapply
+ r-qlcmatrix
r-rcpp
r-rcpproll
r-rsamtools
@@ -15324,7 +15320,8 @@ (define-public r-signac
r-seurat
r-seuratobject
r-stringi
- r-tidyr))
+ r-tidyr
+ r-tidyselect))
(home-page "https://github.com/timoast/signac/")
(synopsis "Analysis of single-cell chromatin data")
(description
--
2.34.0