guix pull command fails

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Details
2 participants
  • Maxime Devos
  • xdrcft56
Owner
unassigned
Submitted by
xdrcft56
Severity
normal
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xdrcft56 wrote on 24 Jan 2022 19:28
(name . bug-guix@gnu.org)(address . bug-guix@gnu.org)
hhhMmiUU2MY2CtB_ARVvOkKInQbyMLYRtW67uR3qjrV9uRHJS5bYZ7C0UFZ2Prn-1rA5fhbOmbI_z_WIyC3yrnYVL2T_c9Gq95rI71uTj_U=@protonmail.com
Attempted to update guix on a foreign distro but received an error along with the following output:

raspbian@guix:~ $ guix pull
Updating channel 'guix' from Git repository at 'https://git.savannah.gnu.org/git/guix.git'...
Authenticating channel 'guix', commits 9edb3f6 to 5b50e96 (1,300 new commits)...
Building from this channel:
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building /gnu/store/dxdg9rf9d3cjrv0r900rzpwmp80a06hy-module-import.drv...
building /gnu/store/n4iii4p1iwg8jmmw5jg78ibv3y86449z-module-import.drv...
building /gnu/store/nxa9l0sgwk67rpwqalqsgsh5yvjxnap9-module-import-compiled.drv...
building /gnu/store/j8ddymsf5nks309kg8zgjcp6ww0nc5b7-module-import-compiled.drv...
building /gnu/store/aa87z2jv4nb6qqy069nv82jbyapjii1m-compute-guix-derivation.drv...
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Maxime Devos wrote on 24 Jan 2022 22:25
35df500da3867665aadb4fadef73e649d5aec30e.camel@telenet.be
xdrcft56 via Bug reports for GNU Guix schreef op ma 24-01-2022 om 18:28
[+0000]:
Toggle quote (13 lines)
> / 'build' phasebuilder for
> `/gnu/store/ajmmafhpmi83ssxg860wd93z9yhhhk5w-gcc-10.3.0.drv' failed
> with exit code 1
> build of /gnu/store/ajmmafhpmi83ssxg860wd93z9yhhhk5w-gcc-10.3.0.drv
> failed
> Backtrace:
> View build log at
> '/var/log/guix/drvs/aj/mmafhpmi83ssxg860wd93z9yhhhk5w-gcc-
> 10.3.0.drv.bz2'.
>           13 (primitive-load
> "/gnu/store/rsfj0ksp0jxw3cqkhyjjv0bffbiazg1m-compute-guix-
> derivation")

To investigate the issue, this log file is required.

Greetings,
Maxime.
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X
X
xdrcft56 wrote on 25 Jan 2022 00:35
(name . Maxime Devos)(address . maximedevos@telenet.be)(address . 53511@debbugs.gnu.org)
HUlrLGynICEibzthGimGKkW6pAdXH50Ywc_PIpNrFjNayqEvcjYNmTLxpU_dgVYmlzHKZESPV6WszqT2wcrwHl0pDgVTAs72_aeoK0TX384=@protonmail.com
Thank you. I've attached the requested log file (/var/log/guix/drvs/aj/mmafhpmi83ssxg860wd93z9yhhhk5w-gcc-10.3.0.drv.bz2).


??????? Original Message ???????

On Monday, January 24th, 2022 at 4:25 PM, Maxime Devos <maximedevos@telenet.be> wrote:

Toggle quote (33 lines)
> xdrcft56 via Bug reports for GNU Guix schreef op ma 24-01-2022 om 18:28
>
> [+0000]:
>
> > / 'build' phasebuilder for
> >
> > `/gnu/store/ajmmafhpmi83ssxg860wd93z9yhhhk5w-gcc-10.3.0.drv' failed
> >
> > with exit code 1
> >
> > build of /gnu/store/ajmmafhpmi83ssxg860wd93z9yhhhk5w-gcc-10.3.0.drv
> >
> > failed
> >
> > Backtrace:
> >
> > View build log at
> >
> > '/var/log/guix/drvs/aj/mmafhpmi83ssxg860wd93z9yhhhk5w-gcc-
> >
> > 10.3.0.drv.bz2'.
> >
> >           13 (primitive-load
> >
> > "/gnu/store/rsfj0ksp0jxw3cqkhyjjv0bffbiazg1m-compute-guix-
> >
> > derivation")
>
> To investigate the issue, this log file is required.
>
> Greetings,
>
> Maxime.
Attachment: mmafhpmi83ssxg860wd93z9yhhhk5w-gcc-10.3.0.drv.bz2
M
M
Maxime Devos wrote on 25 Jan 2022 08:59
(name . xdrcft56)(address . xdrcft56@protonmail.com)(address . 53511@debbugs.gnu.org)
9963b38d99b3d01186aeed61d8ca346e3dade234.camel@telenet.be
xdrcft56 schreef op ma 24-01-2022 om 23:35 [+0000]:
Toggle quote (2 lines)
> Thank you. I've attached the requested log file (/var/log/guix/drvs/aj/mmafhpmi83ssxg860wd93z9yhhhk5w-gcc-10.3.0.drv.bz2).

‘collect2: fatal error: ld terminated with signal 9 [Killed]’

this could indicate an out-of-memory situation, which Guix cannot
really do anything about. If it is a OOM, the dmesg should contain a
message about it (I don't know exactly how it looks like). A future
OOM can be avoided by closing some memory intensive applications (e.g.
most web browsers) and reducing the number of cores used for building:
"guix pull --cores=2 --max-jobs=1".

In principle, it could be something else though. Can you reproduce
with "guix pull --cores=2 --max-jobs=1"?

Also, I'm noticing you are building everything from source.
To avoid having to build things (and hence reduce the chance of
an OOM) (and save energy), I recommend enabling and authorising
substitutes.

Greetings,
Maxime.
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X
X
xdrcft56 wrote on 25 Jan 2022 19:32
(name . Maxime Devos)(address . maximedevos@telenet.be)(address . 53511@debbugs.gnu.org)
fswxmP-UwRLodTcGZGoN05ZqzU-s-hdk-fUUuZSyg9pezwDmyZlflLc-XwgL-CZ1KIxKYMsANN_T4IBfvsFD09q7dn3RLQZgL1qNB6b5idc=@protonmail.com
I attempted the "guix pull --cores=2 --max-jobs=1" command as root and received the following output and error:

Updating channel 'guix' from Git repository at 'https://git.savannah.gnu.org/git/guix.git'...
guix pull: error: Git error: error inflating zlib stream

I also ran "guix archive --authorize < ~root/.config/guix/current/share/guix/ci.guix.gnu.org.pub" in order enable and authorize a substitute but received the same error as above upon running "guix pull --cores=2 --max-jobs=1" subsequently.

Finally, I reviewed dmesg and saw no change during the course of executing these commands.

??????? Original Message ???????

On Tuesday, January 25th, 2022 at 2:59 AM, Maxime Devos <maximedevos@telenet.be> wrote:

Toggle quote (33 lines)
> xdrcft56 schreef op ma 24-01-2022 om 23:35 [+0000]:
>
> > Thank you. I've attached the requested log file (/var/log/guix/drvs/aj/mmafhpmi83ssxg860wd93z9yhhhk5w-gcc-10.3.0.drv.bz2).
>
> ‘collect2: fatal error: ld terminated with signal 9 [Killed]’
>
> this could indicate an out-of-memory situation, which Guix cannot
>
> really do anything about. If it is a OOM, the dmesg should contain a
>
> message about it (I don't know exactly how it looks like). A future
>
> OOM can be avoided by closing some memory intensive applications (e.g.
>
> most web browsers) and reducing the number of cores used for building:
>
> "guix pull --cores=2 --max-jobs=1".
>
> In principle, it could be something else though. Can you reproduce
>
> with "guix pull --cores=2 --max-jobs=1"?
>
> Also, I'm noticing you are building everything from source.
>
> To avoid having to build things (and hence reduce the chance of
>
> an OOM) (and save energy), I recommend enabling and authorising
>
> substitutes.
>
> Greetings,
>
> Maxime.
X
X
xdrcft56 wrote on 26 Jan 2022 19:59
(name . Maxime Devos)(address . maximedevos@telenet.be)(address . 53511@debbugs.gnu.org)
fsQDwop1CVYbdePqUS37Megz7LgrgoHhl3Oaob14a7gS-vmJ0n5pvgajlzWOn2zm1hlpPR04BXn-a9Sorp2OM560sFySJpQ7M5DPTCQ4RWM=@protonmail.com
After debugging this a bit deeper, I see that libgit2.so.1.1.0 is generating the error message "error inflating zlib stream". Which leads me to suspect that the reason I can't "guix pull" is related to guile-git.

I've already reinstalled guix and the error persists.

Is there a way to update guile-git/libgit2.so.1.1.0 without having the ability to "guix pull && guix package -u"?

??????? Original Message ???????

On Tuesday, January 25th, 2022 at 1:32 PM, xdrcft56 <xdrcft56@protonmail.com> wrote:

Toggle quote (47 lines)
> I attempted the "guix pull --cores=2 --max-jobs=1" command as root and received the following output and error:
>
> Updating channel 'guix' from Git repository at 'https://git.savannah.gnu.org/git/guix.git'...
>
> guix pull: error: Git error: error inflating zlib stream
>
> I also ran "guix archive --authorize < ~root/.config/guix/current/share/guix/ci.guix.gnu.org.pub" in order enable and authorize a substitute but received the same error as above upon running "guix pull --cores=2 --max-jobs=1" subsequently.
>
> Finally, I reviewed dmesg and saw no change during the course of executing these commands.
>
> ??????? Original Message ???????
>
> On Tuesday, January 25th, 2022 at 2:59 AM, Maxime Devos maximedevos@telenet.be wrote:
>
> > xdrcft56 schreef op ma 24-01-2022 om 23:35 [+0000]:
> >
> > > Thank you. I've attached the requested log file (/var/log/guix/drvs/aj/mmafhpmi83ssxg860wd93z9yhhhk5w-gcc-10.3.0.drv.bz2).
> >
> > ‘collect2: fatal error: ld terminated with signal 9 [Killed]’
> >
> > this could indicate an out-of-memory situation, which Guix cannot
> >
> > really do anything about. If it is a OOM, the dmesg should contain a
> >
> > message about it (I don't know exactly how it looks like). A future
> >
> > OOM can be avoided by closing some memory intensive applications (e.g.
> >
> > most web browsers) and reducing the number of cores used for building:
> >
> > "guix pull --cores=2 --max-jobs=1".
> >
> > In principle, it could be something else though. Can you reproduce
> >
> > with "guix pull --cores=2 --max-jobs=1"?
> >
> > Also, I'm noticing you are building everything from source.
> >
> > To avoid having to build things (and hence reduce the chance of
> >
> > an OOM) (and save energy), I recommend enabling and authorising
> >
> > substitutes.
> >
> > Greetings,
> >
> > Maxime.
?
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