(address . guix-patches@gnu.org)
20211028151204.23167-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-zellkonverter): New variable.
---
gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++
1 file changed, 32 insertions(+)
Toggle diff (45 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 90a0e1f288..ce3a4badce 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4682,6 +4682,38 @@ (define-public r-zlibbioc
libraries for systems that do not have these available via other means.")
(license license:artistic2.0)))
+(define-public r-zellkonverter
+ (package
+ (name "r-zellkonverter")
+ (version "1.4.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "zellkonverter" version))
+ (sha256
+ (base32 "1ihp2f23lpdfgf3qliy22vrq8czm353hyhqf74r5r712190k6pgg"))))
+ (properties `((upstream-name . "zellkonverter")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-basilisk" ,r-basilisk)
+ ("r-cli" ,r-cli)
+ ("r-delayedarray" ,r-delayedarray)
+ ("r-matrix" ,r-matrix)
+ ("r-reticulate" ,r-reticulate)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-singlecellexperiment" ,r-singlecellexperiment)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/theislab/zellkonverter")
+ (synopsis "Conversion between AnnData and single-cell experiments objects")
+ (description
+ "This package provides methods to convert between Python AnnData objects
+and SingleCellExperiment objects. These are primarily intended for use by
+downstream Bioconductor packages that wrap Python methods for single-cell data
+analysis. It also includes functions to read and write H5AD files used for
+saving AnnData objects to disk.")
+ (license license:expat)))
+
(define-public r-geneplotter
(package
(name "r-geneplotter")
--
2.33.0