Toggle diff (220 lines)
diff --git a/gnu/local.mk b/gnu/local.mk
index 50b11a8ca2..f18fed6fbc 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -296,6 +296,7 @@ GNU_SYSTEM_MODULES = \
%D%/packages/installers.scm \
%D%/packages/ipfs.scm \
%D%/packages/irc.scm \
+ %D%/packages/irods.scm \
%D%/packages/iso-codes.scm \
%D%/packages/jami.scm \
%D%/packages/java.scm \
diff --git a/gnu/packages/irods.scm b/gnu/packages/irods.scm
new file mode 100644
index 0000000000..75a58d97cb
--- /dev/null
+++ b/gnu/packages/irods.scm
@@ -0,0 +1,200 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2021 Ricardo Wurmus <rekado@elephly.net>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gnu packages irods)
+ #:use-module ((guix licenses) #:prefix license:)
+ #:use-module (guix packages)
+ #:use-module (guix download)
+ #:use-module (guix build-system cmake)
+ #:use-module (guix utils)
+ #:use-module (gnu packages)
+ #:use-module (gnu packages backup)
+ #:use-module (gnu packages boost)
+ #:use-module (gnu packages check)
+ #:use-module (gnu packages compression)
+ #:use-module (gnu packages cpp)
+ #:use-module (gnu packages databases)
+ #:use-module (gnu packages gcc)
+ #:use-module (gnu packages kerberos)
+ #:use-module (gnu packages linux)
+ #:use-module (gnu packages llvm)
+ #:use-module (gnu packages logging)
+ #:use-module (gnu packages networking)
+ #:use-module (gnu packages pretty-print)
+ #:use-module (gnu packages python)
+ #:use-module (gnu packages serialization)
+ #:use-module (gnu packages tls)
+ #:use-module (srfi srfi-1))
+
+(define-public irods
+ (package
+ (name "irods")
+ (version "4.2.8")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/irods/irods/releases/download/"
+ version "/irods-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0ny54c3r0j692rvbr4iibg7xgd2i7g9x8yyrw04j889bywix14rc"))))
+ (build-system cmake-build-system)
+ (arguments
+ `(#:configure-flags
+ (list
+ "-DCMAKE_BUILD_TYPE=Release"
+ (string-append "-DCMAKE_MODULE_LINKER_FLAGS=-Wl,-rpath="
+ (assoc-ref %outputs "out") "/lib")
+ (string-append "-DCMAKE_SHARED_LINKER_FLAGS=-Wl,-rpath="
+ (assoc-ref %outputs "out") "/lib")
+ (string-append "-DCMAKE_EXE_LINKER_FLAGS=-Wl,-rpath="
+ (assoc-ref %outputs "out") "/lib")
+
+ ;; Configuration aborts if no generator format is set
+ "-DCPACK_GENERATOR=TGZ"
+
+ ;; Configuration attempts to guess the distribution with Python.
+ "-DIRODS_LINUX_DISTRIBUTION_NAME=guix"
+ "-DIRODS_LINUX_DISTRIBUTION_VERSION_MAJOR=1"
+
+ (string-append "-DIRODS_EXTERNALS_FULLPATH_CLANG="
+ (assoc-ref %build-inputs "clang"))
+ (string-append "-DIRODS_EXTERNALS_FULLPATH_CLANG_RUNTIME="
+ (assoc-ref %build-inputs "clang-runtime"))
+ (string-append "-DIRODS_EXTERNALS_FULLPATH_CPPZMQ="
+ (assoc-ref %build-inputs "cppzmq"))
+ (string-append "-DIRODS_EXTERNALS_FULLPATH_ARCHIVE="
+ (assoc-ref %build-inputs "libarchive"))
+ (string-append "-DIRODS_EXTERNALS_FULLPATH_AVRO="
+ (assoc-ref %build-inputs "avro-cpp"))
+ (string-append "-DIRODS_EXTERNALS_FULLPATH_BOOST="
+ (assoc-ref %build-inputs "boost"))
+ (string-append "-DIRODS_EXTERNALS_FULLPATH_ZMQ="
+ (assoc-ref %build-inputs "zeromq"))
+ (string-append "-DIRODS_EXTERNALS_FULLPATH_JSON="
+ (assoc-ref %build-inputs "json"))
+ (string-append "-DIRODS_EXTERNALS_FULLPATH_CATCH2="
+ (assoc-ref %build-inputs "catch2"))
+ (string-append "-DIRODS_EXTERNALS_FULLPATH_NANODBC="
+ (assoc-ref %build-inputs "nanodbc"))
+ (string-append "-DIRODS_EXTERNALS_FULLPATH_FMT="
+ (assoc-ref %build-inputs "fmt")))
+
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'unset-Werror
+ (lambda _
+ ;; -Werror kills the build due to a comparison REQUIRE(errs.size() == err->len);
+ ;; in unit_tests/src/test_irods_lifetime_manager.cpp
+ (substitute* "CMakeLists.txt"
+ (("-Werror") ""))))
+ (add-after 'unpack 'remove-FHS-and-prefix-assumptions
+ (lambda* (#:key inputs #:allow-other-keys)
+ (substitute* '("CMakeLists.txt"
+ "cmake/server.cmake"
+ "cmake/development_library.cmake"
+ "cmake/runtime_library.cmake")
+ (("usr/") ""))
+ (substitute* "lib/core/src/irods_default_paths.cpp"
+ (("path.append\\(\"usr\"\\)") "path")
+ (("path.remove_filename\\(\\).remove_filename\\(\\).remove_filename\\(\\)")
+ "path.remove_filename().remove_filename()"))
+ (substitute* "scripts/irods/paths.py"
+ (("'usr', 'lib', 'irods'") "'lib', 'irods'"))
+ (substitute* "scripts/irods/pypyodbc.py"
+ (("\"/usr/lib/libodbc.so\"")
+ (string-append (assoc-ref inputs "unixodbc") "/lib/libodbc.so")))))
+ (add-after 'set-paths 'adjust-CPLUS_INCLUDE_PATH
+ (lambda* (#:key inputs #:allow-other-keys)
+ (let ((gcc (assoc-ref inputs "gcc")))
+ (setenv "CPLUS_INCLUDE_PATH"
+ (string-join
+ (cons* (string-append (assoc-ref inputs "libcxx+libcxxabi")
+ "/include/c++/v1")
+ (string-append (assoc-ref inputs "catch2")
+ "/include/catch2")
+ (string-append (assoc-ref inputs "json")
+ "/include/nlohmann")
+ ;; Hide GCC's C++ headers so that they do not interfere with
+ ;; the Clang headers.
+ (delete (string-append gcc "/include/c++")
+ (string-split (getenv "CPLUS_INCLUDE_PATH")
+ #\:)))
+ ":"))
+ (format #true
+ "environment variable `CPLUS_INCLUDE_PATH' changed to ~a~%"
+ (getenv "CPLUS_INCLUDE_PATH"))))))))
+ (inputs
+ `(("avro-cpp" ,(package
+ (inherit avro-cpp-1.9)
+ (arguments
+ `(#:configure-flags
+ '("-DCMAKE_CXX_COMPILER=clang++"
+ "-DCMAKE_CXX_FLAGS=-stdlib=libc++"
+ "-DCMAKE_EXE_LINKER_FLAGS=-lc++abi -lz")
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'chdir
+ (lambda _ (chdir "lang/c++")))
+ (add-after 'set-paths 'adjust-CPLUS_INCLUDE_PATH
+ (lambda* (#:key inputs #:allow-other-keys)
+ (let ((gcc (assoc-ref inputs "gcc")))
+ (setenv "CPLUS_INCLUDE_PATH"
+ (string-join
+ (cons* (string-append (assoc-ref inputs "libcxx+libcxxabi")
+ "/include/c++/v1")
+ ;; Hide GCC's C++ headers so that they do not interfere with
+ ;; the Clang headers.
+ (delete (string-append gcc "/include/c++")
+ (string-split (getenv "CPLUS_INCLUDE_PATH")
+ #\:)))
+ ":"))
+ (format #true
+ "environment variable `CPLUS_INCLUDE_PATH' changed to ~a~%"
+ (getenv "CPLUS_INCLUDE_PATH"))))))))
+ (inputs
+ `(("boost" ,boost-for-irods)
+ ("clang" ,clang-toolchain-6)
+ ("libcxx+libcxxabi" ,libcxx+libcxxabi-6)
+ ("libcxxabi" ,libcxxabi-6)
+ ("snappy" ,snappy-with-clang6)
+ ("zlib" ,zlib)))))
+ ("boost" ,boost-for-irods)
+ ("cppzmq" ,cppzmq)
+ ("fmt" ,fmt-for-irods)
+ ("json" ,json-modern-cxx)
+ ("libarchive" ,libarchive)
+ ("libcxxabi" ,libcxxabi-6) ; we need this for linking with -lc++abi
+ ("linux-pam" ,linux-pam)
+ ("mit-krb5" ,mit-krb5)
+ ("nanodbc" ,nanodbc-for-irods)
+ ("openssl" ,openssl)
+ ("python" ,python-wrapper)
+ ("unixodbc" ,unixodbc)
+ ("zeromq" ,zeromq)))
+ (native-inputs
+ `(("catch2" ,catch-framework2)
+ ("clang" ,clang-toolchain-6)
+ ("clang-runtime" ,clang-runtime-6)
+ ("libcxx+libcxxabi" ,libcxx+libcxxabi-6)))
+ (home-page "https://irods.org")
+ (synopsis "Data management software")
+ (description "The Integrated Rule-Oriented Data System (iRODS) is data
+management software. iRODS virtualizes data storage resources, so users can
+take control of their data, regardless of where and on what device the data is
+stored.")
+ (license license:bsd-3)))
--
2.31.1
