MIA 2.4.6 fails to build

Ludovic Courtès wrote on 2 Apr 2021 09:09

Recipients:(address . bug-guix@gnu.org)

Message-ID:87a6qh40yq.fsf@inria.fr

MIA 2.4.6 fails to build as of 9098745b181b3022587a35afd255f7ff1d41ac86

presumably due to CMake shenanigans as reported here:

https://issues.guix.gnu.org/46724#9

Build failure looks like this:

Toggle snippet (16 lines)[ 13%] Building CXX object mia/core/CMakeFiles/test-core.dir/test_core_combined.cc.o
cd /tmp/guix-build-mia-2.4.6.drv-0/build/mia/core && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++  -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_VERSION=3 -DBOOST_SYSTEM_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DHAVE_CONFIG_H -I/gnu/store/n50ikpnyzdda0zklwnmqasklcrif2csg-eigen-3.3.8/include/eigen3 -I/gnu/store/c8w9z48vvx2a3q3k44ch9yn00wk1qwhb-libxml2-2.9.10/include/libxml2 -I/tmp/guix-build-mia-2.4.6.drv-0/build -I/tmp/guix-build-mia-2.4.6.drv-0/mia-2.4.6  -fpermissive   -fvisibility=hidden -O2 -g -DNDEBUG   -o CMakeFiles/test-core.dir/test_core_combined.cc.o -c /tmp/guix-build-mia-2.4.6.drv-0/mia-2.4.6/mia/core/test_core_combined.cc
/tmp/guix-build-mia-2.4.6.drv-0/mia-2.4.6/addons/vtk/vtkmesh.cc: In function ‘void vtkmia::read_normals(mia::CTriangleMesh&, vtkPointData&)’:
/tmp/guix-build-mia-2.4.6.drv-0/mia-2.4.6/addons/vtk/vtkmesh.cc:179:12: error: ‘class vtkFloatArray’ has no member named ‘GetTupleValue’; did you mean ‘GetValue’?
   normals->GetTupleValue(i, &is->x);
            ^~~~~~~~~~~~~
            GetValue
/tmp/guix-build-mia-2.4.6.drv-0/mia-2.4.6/addons/vtk/vtkmesh.cc: In function ‘void vtkmia::read_colors(mia::CTriangleMesh&, vtkPointData&)’:
/tmp/guix-build-mia-2.4.6.drv-0/mia-2.4.6/addons/vtk/vtkmesh.cc:211:11: error: ‘class vtkFloatArray’ has no member named ‘GetTupleValue’; did you mean ‘GetValue’?
   colors->GetTupleValue(i, &is->x);
           ^~~~~~~~~~~~~
           GetValue
make[2]: *** [addons/vtk/CMakeFiles/mesh-io-vtkmesh-common.dir/build.make:66: addons/vtk/CMakeFiles/mesh-io-vtkmesh-common.dir/vtkmesh.cc.o] Error 1
make[2]: Leaving directory '/tmp/guix-build-mia-2.4.6.drv-0/build'

The problem here is what we’re missing -I flags for VTK, which might be

a CMake incompatibility issue.

Thoughts?

Ludo’.

Efraim Flashner wrote on 6 May 2021 13:51

Recipients:(name . Ludovic Courtès)(address . ludovic.courtes@inria.fr)(address . 47561@debbugs.gnu.org)

Message-ID:YJPYOUCGTk+hfNKJ@3900XT

On Fri, Apr 02, 2021 at 09:09:17AM +0200, Ludovic Courtès wrote:

Toggle quote (31 lines)> MIA 2.4.6 fails to build as of 9098745b181b3022587a35afd255f7ff1d41ac86
> presumably due to CMake shenanigans as reported here:
> 
>   https://issues.guix.gnu.org/46724#9
> 
> Build failure looks like this:
> 
> --8<---------------cut here---------------start------------->8---
> [ 13%] Building CXX object mia/core/CMakeFiles/test-core.dir/test_core_combined.cc.o
> cd /tmp/guix-build-mia-2.4.6.drv-0/build/mia/core && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++  -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_VERSION=3 -DBOOST_SYSTEM_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DHAVE_CONFIG_H -I/gnu/store/n50ikpnyzdda0zklwnmqasklcrif2csg-eigen-3.3.8/include/eigen3 -I/gnu/store/c8w9z48vvx2a3q3k44ch9yn00wk1qwhb-libxml2-2.9.10/include/libxml2 -I/tmp/guix-build-mia-2.4.6.drv-0/build -I/tmp/guix-build-mia-2.4.6.drv-0/mia-2.4.6  -fpermissive   -fvisibility=hidden -O2 -g -DNDEBUG   -o CMakeFiles/test-core.dir/test_core_combined.cc.o -c /tmp/guix-build-mia-2.4.6.drv-0/mia-2.4.6/mia/core/test_core_combined.cc
> /tmp/guix-build-mia-2.4.6.drv-0/mia-2.4.6/addons/vtk/vtkmesh.cc: In function ‘void vtkmia::read_normals(mia::CTriangleMesh&, vtkPointData&)’:
> /tmp/guix-build-mia-2.4.6.drv-0/mia-2.4.6/addons/vtk/vtkmesh.cc:179:12: error: ‘class vtkFloatArray’ has no member named ‘GetTupleValue’; did you mean ‘GetValue’?
>    normals->GetTupleValue(i, &is->x);
>             ^~~~~~~~~~~~~
>             GetValue
> /tmp/guix-build-mia-2.4.6.drv-0/mia-2.4.6/addons/vtk/vtkmesh.cc: In function ‘void vtkmia::read_colors(mia::CTriangleMesh&, vtkPointData&)’:
> /tmp/guix-build-mia-2.4.6.drv-0/mia-2.4.6/addons/vtk/vtkmesh.cc:211:11: error: ‘class vtkFloatArray’ has no member named ‘GetTupleValue’; did you mean ‘GetValue’?
>    colors->GetTupleValue(i, &is->x);
>            ^~~~~~~~~~~~~
>            GetValue
> make[2]: *** [addons/vtk/CMakeFiles/mesh-io-vtkmesh-common.dir/build.make:66: addons/vtk/CMakeFiles/mesh-io-vtkmesh-common.dir/vtkmesh.cc.o] Error 1
> make[2]: Leaving directory '/tmp/guix-build-mia-2.4.6.drv-0/build'
> --8<---------------cut here---------------end--------------->8---
> 
> The problem here is what we’re missing -I flags for VTK, which might be
> a CMake incompatibility issue.
> 
> Thoughts?
> 
> Ludo’.

Debian builds mia with vtk@7, which is the one we're missing between 6
and 9.

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Efraim Flashner   <efraim@flashner.co.il>   ????? ?????
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