[PATCH] refresh: Add '--installed' option.

DoneSubmitted by Xinglu Chen.
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4 participants
  • Léo Le Bouter
  • Ludovic Courtès
  • Xinglu Chen
  • zimoun
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unassigned
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normal
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Xinglu Chen wrote on 15 Mar 16:45 +0100
(address . guix-patches@gnu.org)
bbf925b124979bf1203f3619d06dc51948b0f81e.1615822877.git.public@yoctocell.xyz
This lets the user to only check for updates for packages installed in thecurrent profile.
If the user is using the imperative way to install packages, or usesmultiple manifests, this is a quick way to check for updates for theinstalled packages.
* guix/scripts/refresh.scm (%options): Add '--installed' option.* guix.texi (Invoking guix refresh): Document it.--- doc/guix.texi | 5 +++++ guix/scripts/refresh.scm | 14 +++++++++++++- 2 files changed, 18 insertions(+), 1 deletion(-)
Toggle diff (59 lines)diff --git a/doc/guix.texi b/doc/guix.texiindex 3e7ffc81bc..c778a877d8 100644--- a/doc/guix.texi+++ b/doc/guix.texi@@ -11657,6 +11657,11 @@ Select all the packages from the manifest in @var{file}. This is useful to check if any packages of the user manifest can be updated. +@item --installed+@itemx -i+Select all the packages installed in the current profile. This is+useful to check if any of the packages the user is using can be updated.+ @item --type=@var{updater} @itemx -t @var{updater} Select only packages handled by @var{updater} (may be a comma-separateddiff --git a/guix/scripts/refresh.scm b/guix/scripts/refresh.scmindex fb6c52a567..c1c672dc0b 100644--- a/guix/scripts/refresh.scm+++ b/guix/scripts/refresh.scm@@ -86,6 +86,9 @@ (option '(#\m "manifest") #t #f (lambda (opt name arg result) (alist-cons 'manifest arg result)))+ (option '(#\i "installed") #f #f+ (lambda (opt name arg result)+ (alist-cons 'installed #t result))) (option '(#\e "expression") #t #f (lambda (opt name arg result) (alist-cons 'expression arg result)))@@ -156,6 +159,9 @@ specified with `--select'.\n")) (display (G_ " -m, --manifest=FILE select all the packages from the manifest in FILE")) (display (G_ "+ -i --installed select all the packages installed in the current+ profile"))+ (display (G_ " -t, --type=UPDATER,... restrict to updates from the specified updaters (e.g., 'gnu')")) (display (G_ "@@ -253,7 +259,13 @@ update would trigger a complete rebuild." (define packages (match (assoc-ref opts 'manifest)- (#f args-packages)+ (#f (if (assoc-ref opts 'installed)+ ;; All packages installed in current profile+ (manifest->packages+ (match (manifest->code (profile-manifest %current-profile))+ (('begin expr) (eval expr+ (make-user-module '((gnu packages)))))))+ args-packages)) ((? string? file) (packages-from-manifest file)))) (if (assoc-ref opts 'recursive?)
base-commit: 266d55dc3080475544bf45e72359c9b9bbcecd53-- 2.30.2
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Ludovic Courtès wrote on 15 Mar 21:38 +0100
(name . Xinglu Chen)(address . public@yoctocell.xyz)(address . 47163@debbugs.gnu.org)
87v99sb1aa.fsf@gnu.org
Hi,
Xinglu Chen <public@yoctocell.xyz> skribis:
Toggle quote (10 lines)> This lets the user to only check for updates for packages installed in the> current profile.>> If the user is using the imperative way to install packages, or uses> multiple manifests, this is a quick way to check for updates for the> installed packages.>> * guix/scripts/refresh.scm (%options): Add '--installed' option.> * guix.texi (Invoking guix refresh): Document it.
I sometimes run:
guix refresh $(guix package -I | cut -f1)
I’m not sure an extra ‘guix refresh’ option is warranted. WDYT?
Thanks,Ludo’.
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Xinglu Chen wrote on 15 Mar 22:14 +0100
(name . Ludovic Courtès)(address . ludo@gnu.org)(address . 47163@debbugs.gnu.org)
87mtv4azmi.fsf@yoctocell.xyz
On Mon, Mar 15 2021, Ludovic Courtès wrote:
Toggle quote (20 lines)> Hi,>> Xinglu Chen <public@yoctocell.xyz> skribis:>>> This lets the user to only check for updates for packages installed in the>> current profile.>>>> If the user is using the imperative way to install packages, or uses>> multiple manifests, this is a quick way to check for updates for the>> installed packages.>>>> * guix/scripts/refresh.scm (%options): Add '--installed' option.>> * guix.texi (Invoking guix refresh): Document it.>> I sometimes run:>> guix refresh $(guix package -I | cut -f1)>> I’m not sure an extra ‘guix refresh’ option is warranted. WDYT?
That's cool, I think your solution would suffice. Maybe we could add itto the manual or cookbok?
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Ludovic Courtès wrote on 16 Mar 10:08 +0100
(name . Xinglu Chen)(address . public@yoctocell.xyz)(address . 47163@debbugs.gnu.org)
87tupb8nzs.fsf@gnu.org
Hi,
Xinglu Chen <public@yoctocell.xyz> skribis:
Toggle quote (25 lines)> On Mon, Mar 15 2021, Ludovic Courtès wrote:>>> Hi,>>>> Xinglu Chen <public@yoctocell.xyz> skribis:>>>>> This lets the user to only check for updates for packages installed in the>>> current profile.>>>>>> If the user is using the imperative way to install packages, or uses>>> multiple manifests, this is a quick way to check for updates for the>>> installed packages.>>>>>> * guix/scripts/refresh.scm (%options): Add '--installed' option.>>> * guix.texi (Invoking guix refresh): Document it.>>>> I sometimes run:>>>> guix refresh $(guix package -I | cut -f1)>>>> I’m not sure an extra ‘guix refresh’ option is warranted. WDYT?>> That's cool, I think your solution would suffice. Maybe we could add it> to the manual or cookbok?
That’s a good idea. Do you want to propose a short section on this?
You may also like the new ‘--with-latest’ package transformationoption. :-)
Thanks,Ludo’.
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Léo Le Bouter wrote on 16 Mar 10:16 +0100
Re: [bug#47163] [PATCH] refresh: Add '--installed' option.
(address . 47163@debbugs.gnu.org)
c239688b3e196a31a1576cd7e6b764f19b2cfb40.camel@zaclys.net
On Tue, 2021-03-16 at 10:08 +0100, Ludovic Courtès wrote:
Toggle quote (42 lines)> Hi,> > Xinglu Chen <public@yoctocell.xyz> skribis:> > > On Mon, Mar 15 2021, Ludovic Courtès wrote:> > > > > Hi,> > > > > > Xinglu Chen <public@yoctocell.xyz> skribis:> > > > > > > This lets the user to only check for updates for packages> > > > installed in the> > > > current profile.> > > > > > > > If the user is using the imperative way to install packages, or> > > > uses> > > > multiple manifests, this is a quick way to check for updates> > > > for the> > > > installed packages.> > > > > > > > * guix/scripts/refresh.scm (%options): Add '--installed'> > > > option.> > > > * guix.texi (Invoking guix refresh): Document it.> > > > > > I sometimes run:> > > > > > guix refresh $(guix package -I | cut -f1)> > > > > > I’m not sure an extra ‘guix refresh’ option is warranted. WDYT?> > > > That's cool, I think your solution would suffice. Maybe we could> > add it> > to the manual or cookbok?> > That’s a good idea. Do you want to propose a short section on this?> > You may also like the new ‘--with-latest’ package transformation> option. :-)> > Thanks,> Ludo’.
I would also really like such option for 'lint' and 'refresh' that cantake an operating-system definition so I can ensure a certain set ofpackages are up to some standards and help me focus my efforts on my orsome fellow's configuration (especially w.r.t. security), rather thanrandomly trying to maintain *everything* in the GNU Guix repo which isquite exhausting and large work to take on. Starting from a place ofactual need for myself and some fellow's configurations looks like amore achieveable goal mid-term.
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zimoun wrote on 16 Mar 13:58 +0100
(name . Léo Le Bouter)(address . lle-bout@zaclys.net)
CAJ3okZ0JazBeC7kpK24tvh6FBCG6X3P44ZqQ3=BWVobUF=7u0Q@mail.gmail.com
Hi Léo,
On Tue, 16 Mar 2021 at 10:18, Léo Le Bouter via Guix-patches via<guix-patches@gnu.org> wrote:
Toggle quote (9 lines)> I would also really like such option for 'lint' and 'refresh' that can> take an operating-system definition so I can ensure a certain set of> packages are up to some standards and help me focus my efforts on my or> some fellow's configuration (especially w.r.t. security), rather than> randomly trying to maintain *everything* in the GNU Guix repo which is> quite exhausting and large work to take on. Starting from a place of> actual need for myself and some fellow's configurations looks like a> more achieveable goal mid-term.
Adding the manifest option to "guix lint", is it not enough? I do notknow how many packages you have in your operating-system definitionbut from my understanding your user-wide packages should be inmanifest.scm files, and you could also maintain a manifest.scm filefor your packages system-wide. Anyway.
Here an example with an hard-coded path, saved in /tmp/manifest-from-os.scm:
Toggle snippet (12 lines)(use-modules (gnu system) (guix profiles))
(define os (load "/home/simon/src/guix/guix/gnu/system/examples/bare-bones.tmpl"))
(define pkgs (operating-system-packages os))
(packages->manifest pkgs)
Then "guix refresh -m /tmp/manifest-from-os.scm" should do the job.Well, it is an example, the point is simply to show that an option isnot necessary, IMHO. However, a robust script could be in etc/ withsome other tools and with a line in the manual. Maybe. :-)It seems better to keep separated what operates on packages and whatoperates on system.

Cheers,simon
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Léo Le Bouter wrote on 16 Mar 14:10 +0100
(name . zimoun)(address . zimon.toutoune@gmail.com)
c44dd89055dee349c4ddff43c5d29f6ad23588d1.camel@zaclys.net
On Tue, 2021-03-16 at 13:58 +0100, zimoun wrote:
Toggle quote (35 lines)> Adding the manifest option to "guix lint", is it not enough? I do> not> know how many packages you have in your operating-system definition> but from my understanding your user-wide packages should be in> manifest.scm files, and you could also maintain a manifest.scm file> for your packages system-wide. Anyway.> > Here an example with an hard-coded path, saved in /tmp/manifest-from-> os.scm:> > --8<---------------cut here---------------start------------->8---> (use-modules> (gnu system)> (guix profiles))> > (define os> (load "/home/simon/src/guix/guix/gnu/system/examples/bare-> bones.tmpl"))> > (define pkgs (operating-system-packages os))> > (packages->manifest pkgs)> --8<---------------cut here---------------end--------------->8---> > Then "guix refresh -m /tmp/manifest-from-os.scm" should do the job.> Well, it is an example, the point is simply to show that an option is> not necessary, IMHO. However, a robust script could be in etc/ with> some other tools and with a line in the manual. Maybe. :-)> It seems better to keep separated what operates on packages and what> operates on system.> > > Cheers,> simon
You are right that looks great!
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Xinglu Chen wrote on 16 Mar 17:05 +0100
(name . Ludovic Courtès)(address . ludo@gnu.org)(address . 47163@debbugs.gnu.org)
87k0q7t77b.fsf@yoctocell.xyz
On Tue, Mar 16 2021, Ludovic Courtès wrote:
Toggle quote (11 lines)>>> I sometimes run:>>>>>> guix refresh $(guix package -I | cut -f1)>>>>>> I’m not sure an extra ‘guix refresh’ option is warranted. WDYT?>>>> That's cool, I think your solution would suffice. Maybe we could add it>> to the manual or cookbok?>> That’s a good idea. Do you want to propose a short section on this?
Sure, I will send a followup patch to this.
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Xinglu Chen wrote on 16 Mar 17:19 +0100
[PATCH] doc: Add snippet for running 'guix refresh' on installed packages
(address . 47163@debbugs.gnu.org)(name . Ludovic Courtès)(address . ludo@gnu.org)
1b75951ffc583006980d809718e5cdc4fd1c3d37.1615911469.git.public@yoctocell.xyz
* doc/guix.texi (Invoking guix refresh): Add snippet that runs 'guix refresh'on all the packages installed in the current profile.--- doc/guix.texi | 10 ++++++++++ 1 file changed, 10 insertions(+)
Toggle diff (25 lines)diff --git a/doc/guix.texi b/doc/guix.texiindex 3e7ffc81bc..752dce9072 100644--- a/doc/guix.texi+++ b/doc/guix.texi@@ -11722,6 +11722,16 @@ @code{idutils} packages. The @option{--select} option would have no effect in this case. +You can also quickly update all the packages installed in the current+profile with the following snippet:++@example+$ guix refresh -u $(guix package --list-installed | cut -f1)+@end example++This is handy if you don't use manifests for installing packages into+your profile.+ When considering whether to upgrade a package, it is sometimes convenient to know which packages would be affected by the upgrade and should be checked for compatibility. For this the following option may
base-commit: 266d55dc3080475544bf45e72359c9b9bbcecd53-- 2.30.2
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Xinglu Chen wrote on 16 Mar 17:44 +0100
Using package transformations declaratively (was: [bug#47163] [PATCH] refresh: Add '--installed' option.)
(name . Ludovic Courtès)(address . ludo@gnu.org)
87blbjt5es.fsf@yoctocell.xyz
On Tue, Mar 16 2021, Ludovic Courtès wrote:
Toggle quote (3 lines)> You may also like the new ‘--with-latest’ package transformation> option. :-)
I really like package transformations but is there a way to use specifythem with Guile so I can use them with `guix home`[1] or in manifests?
Ccing guix-devel
[1]: https://yhetil.org/guix-devel/878s6u2pco.fsf@trop.in
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zimoun wrote on 16 Mar 18:23 +0100
(name . Xinglu Chen)(address . public@yoctocell.xyz)
CAJ3okZ1OWCT07n17Wo0c_Par3gO1mEE6_Y_Zy=eFnTJZ5Ec2sw@mail.gmail.com
Hi,
On Tue, 16 Mar 2021 at 17:46, Xinglu Chen <public@yoctocell.xyz> wrote:
Toggle quote (8 lines)> On Tue, Mar 16 2021, Ludovic Courtès wrote:>> > You may also like the new ‘--with-latest’ package transformation> > option. :-)>> I really like package transformations but is there a way to use specify> them with Guile so I can use them with `guix home`[1] or in manifests?
There is several ways to have package transformations at the manifestlevel. One is:
Toggle snippet (11 lines)(use-modules (guix transformations))
(define transform1 (options->transformation '((with-c-toolchain . "hello=gcc-toolchain@8"))))
(packages->manifest (list (transform1 (specification->package "hello"))))

HTH,simon
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Ludovic Courtès wrote on 16 Mar 19:06 +0100
Re: [PATCH] doc: Add snippet for running 'guix refresh' on installed packages
(name . Xinglu Chen)(address . public@yoctocell.xyz)(address . 47163@debbugs.gnu.org)
877dm77z38.fsf@gnu.org
Hi,
Xinglu Chen <public@yoctocell.xyz> skribis:
Toggle quote (3 lines)> * doc/guix.texi (Invoking guix refresh): Add snippet that runs 'guix refresh'> on all the packages installed in the current profile.
[...]
Toggle quote (10 lines)> +You can also quickly update all the packages installed in the current> +profile with the following snippet:> +> +@example> +$ guix refresh -u $(guix package --list-installed | cut -f1)> +@end example> +> +This is handy if you don't use manifests for installing packages into> +your profile.
Note that if you type this literally, it fails along these lines:
Toggle snippet (20 lines)$ guix refresh -u grep
Starting download of /tmp/guix-file.yLXS45From https://ftpmirror.gnu.org/gnu/grep/grep-3.6.tar.xz...following redirection to `https://gnu.mirror.constant.com/grep/grep-3.6.tar.xz'... …6.tar.xz 1.5MiB 2.3MiB/s 00:01 [##################] 100.0%
Starting download of /tmp/guix-file.NgvvW4From https://ftpmirror.gnu.org/gnu/grep/grep-3.6.tar.xz.sig...following redirection to `https://mirrors.ocf.berkeley.edu/gnu/grep/grep-3.6.tar.xz.sig'... …tar.xz.sig 833B 1.8MiB/s 00:00 [##################] 100.0%gpgv: Signature made Mon 09 Nov 2020 05:40:03 AM CETgpgv: using RSA key 155D3FC500C834486D1EEA677FD9FCCB000BEEEEgpgv: Good signature from "Jim Meyering <jim@meyering.net>"gpgv: aka "Jim Meyering <meyering@fb.com>"gpgv: aka "Jim Meyering <meyering@gnu.org>"gnu/packages/base.scm:99:12: grep: updating from version 3.4 to version 3.6...guix refresh: error: mkstemp!: Read-only file system
So I think this example may be misleading. We could instead suggest./pre-inst-env, with a link to “Running Guix Before It Is Installed”,and possibly mention the ‘--with-latest’ option as well.
WDYT?
Thanks,Ludo’.
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Xinglu Chen wrote on 16 Mar 19:34 +0100
(name . Ludovic Courtès)(address . ludo@gnu.org)(address . 47163@debbugs.gnu.org)
87h7lbrlr9.fsf@yoctocell.xyz
On Tue, Mar 16 2021, Ludovic Courtès wrote:
Toggle quote (44 lines)>> * doc/guix.texi (Invoking guix refresh): Add snippet that runs 'guix refresh'>> on all the packages installed in the current profile.>> [...]>>> +You can also quickly update all the packages installed in the current>> +profile with the following snippet:>> +>> +@example>> +$ guix refresh -u $(guix package --list-installed | cut -f1)>> +@end example>> +>> +This is handy if you don't use manifests for installing packages into>> +your profile.>> Note that if you type this literally, it fails along these lines:>> --8<---------------cut here---------------start------------->8---> $ guix refresh -u grep>> Starting download of /tmp/guix-file.yLXS45> From https://ftpmirror.gnu.org/gnu/grep/grep-3.6.tar.xz...> following redirection to `https://gnu.mirror.constant.com/grep/grep-3.6.tar.xz'...> …6.tar.xz 1.5MiB 2.3MiB/s 00:01 [##################] 100.0%>> Starting download of /tmp/guix-file.NgvvW4> From https://ftpmirror.gnu.org/gnu/grep/grep-3.6.tar.xz.sig...> following redirection to `https://mirrors.ocf.berkeley.edu/gnu/grep/grep-3.6.tar.xz.sig'...> …tar.xz.sig 833B 1.8MiB/s 00:00 [##################] 100.0%> gpgv: Signature made Mon 09 Nov 2020 05:40:03 AM CET> gpgv: using RSA key 155D3FC500C834486D1EEA677FD9FCCB000BEEEE> gpgv: Good signature from "Jim Meyering <jim@meyering.net>"> gpgv: aka "Jim Meyering <meyering@fb.com>"> gpgv: aka "Jim Meyering <meyering@gnu.org>"> gnu/packages/base.scm:99:12: grep: updating from version 3.4 to version 3.6...> guix refresh: error: mkstemp!: Read-only file system> --8<---------------cut here---------------end--------------->8--->> So I think this example may be misleading. We could instead suggest> ./pre-inst-env, with a link to “Running Guix Before It Is Installed”,> and possibly mention the ‘--with-latest’ option as well.>> WDYT?
Sorry, I should have tested the command... When you say "--with-latest",do you mean `guix package -i grep --with-latest`?
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Xinglu Chen wrote on 16 Mar 19:35 +0100
Re: [bug#47163] Using package transformations declaratively (was: [bug#47163] [PATCH] refresh: Add '--installed' option.)
(name . zimoun)(address . zimon.toutoune@gmail.com)
87eegfrloi.fsf@yoctocell.xyz
On Tue, Mar 16 2021, zimoun wrote:
Toggle quote (17 lines)>> I really like package transformations but is there a way to use specify>> them with Guile so I can use them with `guix home`[1] or in manifests?>> There is several ways to have package transformations at the manifest> level. One is:>> --8<---------------cut here---------------start------------->8---> (use-modules (guix transformations))>> (define transform1> (options->transformation> '((with-c-toolchain . "hello=gcc-toolchain@8"))))>> (packages->manifest> (list (transform1 (specification->package "hello"))))> --8<---------------cut here---------------end--------------->8---
Cool, thanks for the help.
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Ludovic Courtès wrote on 17 Mar 18:17 +0100
Re: [bug#47163] Using package transformations declaratively
(name . zimoun)(address . zimon.toutoune@gmail.com)
87a6r13dk7.fsf@gnu.org
Hi,
zimoun <zimon.toutoune@gmail.com> skribis:
Toggle quote (12 lines)> There is several ways to have package transformations at the manifest> level. One is:>> (use-modules (guix transformations))>> (define transform1> (options->transformation> '((with-c-toolchain . "hello=gcc-toolchain@8"))))>> (packages->manifest> (list (transform1 (specification->package "hello"))))
On this topic, do not miss this section of the fine manual:https://guix.gnu.org/manual/en/html_node/Defining-Package-Variants.html.:-)
Ludo’.
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Ludovic Courtès wrote on 18 Mar 10:31 +0100
Re: [PATCH] doc: Add snippet for running 'guix refresh' on installed packages
(name . Xinglu Chen)(address . public@yoctocell.xyz)(address . 47163@debbugs.gnu.org)
871rccx0yj.fsf@gnu.org
Xinglu Chen <public@yoctocell.xyz> skribis:
Toggle quote (2 lines)> On Tue, Mar 16 2021, Ludovic Courtès wrote:
[...]
Toggle quote (9 lines)>> So I think this example may be misleading. We could instead suggest>> ./pre-inst-env, with a link to “Running Guix Before It Is Installed”,>> and possibly mention the ‘--with-latest’ option as well.>>>> WDYT?>> Sorry, I should have tested the command... When you say "--with-latest",> do you mean `guix package -i grep --with-latest`?
Yes, see the “Package Transformation Options” section of the manual.
Ludo’.
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Xinglu Chen wrote on 26 Mar 18:18 +0100
Re: [bug#47163] [PATCH] refresh: Add '--installed' option.
(address . 47163-done@debbugs.gnu.org)
87eeg1omto.fsf@yoctocell.xyz
The v2 patch has been applied. Closing.
Closed
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Ludovic Courtès wrote on 27 Mar 11:57 +0100
control message for bug #47163
(address . control@debbugs.gnu.org)
87wntszwwg.fsf@gnu.org
tags 47163 wontfixclose 47163quit
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