(address . guix-patches@gnu.org)
CAO+9K5q4hMdgqELnUDBqXdwmmZ8SpVEC1NA7Y2t9YJPkDMnt4A@mail.gmail.com
Hi Guix team!
This issue includes 5 more packages:
- astroalign
- sep
- pyerfa
- erfa
- qfits
Related issue https://issues.guix.gnu.org/46375
--
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From 75b993c2a0f56d9371d8eb64c25ffe561e023e30 Mon Sep 17 00:00:00 2001
From: Sharlatan Hellseher <sharlatanus@gmail.com>
Date: Sat, 13 Feb 2021 14:39:54 +0000
Subject: [PATCH 2/5] gnu: Add erfa
* gnu/packages/astronomy.scm (erfa): New variable.
---
gnu/packages/astronomy.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
Toggle diff (38 lines)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 1fc035dd60..8d58d64a1c 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -111,6 +111,31 @@ in FITS files.")
reading and writing.")
(license license:gpl3+)))
+(define-public erfa
+ (package
+ (name "erfa")
+ (version "1.7.2")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/liberfa/erfa")
+ (commit (string-append "v" version))))
+ (sha256
+ (base32 "1vsqwvzlk7r8q7nwyb7i710blcfdl5kwcm2va9km07a820nsp84a"))))
+ (build-system gnu-build-system)
+ (native-inputs
+ `(("pkg-config" ,pkg-config)
+ ("libtool" ,libtool)
+ ("automake" ,automake)
+ ("autoreconf" ,autoconf)))
+ (home-page "https://github.com/liberfa/erfa")
+ (synopsis "Essential Routines for Fundamental Astronomy")
+ (description
+ "ERFA is a C library containing key algorithms for astronomy, and is based
+on the SOFA library published by the International Astronomical Union (IAU).")
+ (license license:bsd-3)))
+
(define-public eye
(package
(name "eye")
--
2.30.0
From 2987afa869ab7955aa8a25a8bb6f74e98f26447e Mon Sep 17 00:00:00 2001
From: Sharlatan Hellseher <sharlatanus@gmail.com>
Date: Sat, 13 Feb 2021 15:20:30 +0000
Subject: [PATCH 4/5] gnu: Add sep
* gnu/packages/astronomy.scm (python-sep): New variable.
---
gnu/packages/astronomy.scm | 23 +++++++++++++++++++++++
1 file changed, 23 insertions(+)
Toggle diff (33 lines)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 59afe21294..beea02af13 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -812,3 +812,26 @@ astronomy, which is based on the SOFA library published by the International
Astronomical Union (IAU). All C routines are wrapped as Numpy universal
functions, so that they can be called with scalar or array inputs.")
(license license:bsd-3)))
+
+(define-public python-sep
+ (package
+ (name "python-sep")
+ (version "1.1.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "sep" version))
+ (sha256
+ (base32 "0wxdqn92q1grv8k7xi7h88ac6wnznw4xh5bdlz1vz6za2dgsyj4m"))))
+ (build-system python-build-system)
+ (native-inputs
+ `(("cython" ,python-cython)
+ ("pytest" ,python-pytest)))
+ (inputs
+ `(("numpy" ,python-numpy)))
+ (home-page "https://github.com/kbarbary/sep")
+ (synopsis "Astronomical source extraction and photometry library")
+ (description
+ "SEP makes the core algorithms of Source Extractor available as a library
+of stand-alone functions and classes.")
+ (license license:expat))) ;; it comes with 3 licenses/[BSD, LGPL, MIT]
--
2.30.0
From 62ef9706e60f24e0160acad4a82d7f62bc6592ba Mon Sep 17 00:00:00 2001
From: Sharlatan Hellseher <sharlatanus@gmail.com>
Date: Sat, 13 Feb 2021 14:30:01 +0000
Subject: [PATCH 1/5] gnu: Add qfits
* gnu/packages/astronomy.scm (qfits): New variables.
---
gnu/packages/astronomy.scm | 19 +++++++++++++++++++
1 file changed, 19 insertions(+)
Toggle diff (32 lines)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 07dee4b462..1fc035dd60 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -92,6 +92,25 @@ in FITS files.")
(license (license:non-copyleft "file://License.txt"
"See License.txt in the distribution."))))
+(define-public qfits
+ (package
+ (name "qfits")
+ (version "6.2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri
+ (string-append "ftp://ftp.eso.org/pub/qfits/qfits-" version ".tar.gz"))
+ (sha256
+ (base32 "0m2b21mim3a7wgfg3ph2w5hv7mdvr03jmmhzipc0wcahijglcw9j"))))
+ (build-system gnu-build-system)
+ (home-page "https://www.eso.org/sci/software/eclipse/qfits/")
+ (synopsis "C library offering access to astronomical FITS files")
+ (description
+ "@code{qfits} is a C library giving access to FITS file internals, both for
+reading and writing.")
+ (license license:gpl3+)))
+
(define-public eye
(package
(name "eye")
--
2.30.0
From d550f12c64e46dad9e3d3de757772acad083f645 Mon Sep 17 00:00:00 2001
From: Sharlatan Hellseher <sharlatanus@gmail.com>
Date: Sat, 13 Feb 2021 16:30:48 +0000
Subject: [PATCH 5/5] gnu: Add astroalign
* gnu/packages/astronomy.scm (python-astroalign): New variable.
---
gnu/packages/astronomy.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
Toggle diff (44 lines)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index beea02af13..f4dad79d81 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -49,6 +49,7 @@
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages pretty-print)
#:use-module (gnu packages python-check)
+ #:use-module (gnu packages python-science)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages qt)
#:use-module (gnu packages version-control)
@@ -835,3 +836,29 @@ functions, so that they can be called with scalar or array inputs.")
"SEP makes the core algorithms of Source Extractor available as a library
of stand-alone functions and classes.")
(license license:expat))) ;; it comes with 3 licenses/[BSD, LGPL, MIT]
+
+(define-public python-astroalign
+ (package
+ (name "python-astroalign")
+ (version "2.3.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "astroalign" version))
+ (sha256
+ (base32 "19qzv3552lgrd9qmj0rxs51wmx485hw04cbf76ds5pin85kfaiy1"))))
+ (build-system python-build-system)
+ (arguments
+ ;; TODO: (Sharlatan-20210213T162940+0000): I could not make tests run
+ `(#:tests? #f))
+ (inputs
+ `(("numpy" ,python-numpy)
+ ("scikit-image" ,python-scikit-image)
+ ("scipy" ,python-scipy)
+ ("sep" ,python-sep)))
+ (home-page "https://astroalign.readthedocs.io/")
+ (synopsis "Astrometric Alignment of Images")
+ (description
+ "ASTROALIGN is a python module that will try to align two stellar
+astronomical images, especially when there is no WCS information available.")
+ (license license:expat)))
--
2.30.0
From 4537223357da02adcf118e4376bc6884be77cd86 Mon Sep 17 00:00:00 2001
From: Sharlatan Hellseher <sharlatanus@gmail.com>
Date: Sat, 13 Feb 2021 15:10:04 +0000
Subject: [PATCH 3/5] gnu: Add pyerfa
* gnu/packages/astronomy.scm (python-pyerfa): New variable.
---
gnu/packages/astronomy.scm | 42 ++++++++++++++++++++++++++++++++++++++
1 file changed, 42 insertions(+)
Toggle diff (59 lines)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 8d58d64a1c..59afe21294 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -48,6 +48,7 @@
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages pretty-print)
+ #:use-module (gnu packages python-check)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages qt)
#:use-module (gnu packages version-control)
@@ -770,3 +771,44 @@ more.")
"The package is a Python implementation of the mathematics that standard
JPL ephemerides use to predict raw (x,y,z) planetary positions.")
(license license:expat)))
+
+(define-public python-pyerfa
+ (package
+ (name "python-pyerfa")
+ (version "1.7.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "pyerfa" version))
+ (sha256
+ (base32 "1s78mdyrxha2jcckfs0wg5ynkf0pwh1bw9mmh99vprinxh9n4xri"))
+ (modules '((guix build utils)))
+ (snippet
+ '(begin
+ ;; Remove bundled submodule library.
+ (delete-file-recursively "liberfa")
+ #t))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-before 'build 'use-system-liberfa
+ (lambda _
+ (setenv "PYERFA_USE_SYSTEM_LIBERFA" "1")
+ #t)))))
+ (native-inputs
+ `(("pytest" ,python-pytest)
+ ("setuptools-scm" ,python-setuptools-scm)
+ ("pytest-doctestplus" ,python-pytest-doctestplus)))
+ (inputs
+ `(("liberfa" ,erfa)
+ ("numpy" ,python-numpy)))
+ (home-page "https://github.com/liberfa/pyerfa")
+ (synopsis "Python bindings for ERFA")
+ (description
+ "PyERFA is the Python wrapper for the ERFA library (Essential
+Routines for Fundamental Astronomy), a C library containing key algorithms for
+astronomy, which is based on the SOFA library published by the International
+Astronomical Union (IAU). All C routines are wrapped as Numpy universal
+functions, so that they can be called with scalar or array inputs.")
+ (license license:bsd-3)))
--
2.30.0