Mădălin Ionel Patrașcu wrote 4 years ago
(address . guix-patches@gnu.org)(address . rekado@elephly.net)(name . Mădălin Ionel Patrașcu)(address . madalinionel.patrascu@mdc-berlin.de)
20201216221701.3596-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-gagedata): New variable.
---
gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
Toggle diff (36 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 85ee56c539..36274d0b39 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9187,3 +9187,29 @@ CATALYST (Cytometry dATa anALYSis Tools) to provide a pipeline for
preprocessing of cytometry data, including i) normalization using bead
standards, ii) single-cell deconvolution, and iii) bead-based compensation.")
(license license:gpl2+)))
+
+(define-public r-gagedata
+ (package
+ (name "r-gagedata")
+ (version "2.28.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "gageData" version 'experiment))
+ (sha256
+ (base32 "16lmnvmbykvbdgwyx7r2jc217gb9nidn81860v5kri99g97j4jdn"))))
+ (properties `((upstream-name . "gageData")))
+ (build-system r-build-system)
+ (home-page "https://bioconductor.org/packages/gageData")
+ (synopsis "Auxillary data for gage package")
+ (description
+ "This is a supportive data package for the software package @code{gage}.
+However, the data supplied here are also useful for gene set or pathway
+analysis or microarray data analysis in general. In this package, we provide
+two demo microarray dataset: GSE16873 (a breast cancer dataset from GEO) and
+BMP6 (originally published as an demo dataset for GAGE, also registered as
+GSE13604 in GEO). This package also includes commonly used gene set data based
+on KEGG pathways and GO terms for major research species, including human,
+mouse, rat and budding yeast. Mapping data between common gene IDs for budding
+yeast are also included.")
+ (license license:gpl2+)))
--
2.29.2