Mădălin Ionel Patrașcu wrote 4 years ago
(address . guix-patches@gnu.org)(address . rekado@elephly.net)(name . Mădălin Ionel Patrașcu)(address . madalinionel.patrascu@mdc-berlin.de)
20201216215942.3029-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-org-eck12-eg-db): New variable.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
Toggle diff (37 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 3026d1a496..2d96cc7766 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9273,3 +9273,30 @@ graphs. It parses the regularly updated kgml (Kegg xml) files into graph models
maintaining all essential pathway attributes. The package offers
functionalities including parsing, graph operation, visualization and etc.")
(license license:gpl2+)))
+
+(define-public r-org-eck12-eg-db
+ (package
+ (name "r-org-eck12-eg-db")
+ (version "3.12.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "org.EcK12.eg.db" version 'annotation))
+ (sha256
+ (base32 "0c4p6jr83k0gm6pvn760yr8xf33wggrfcr6fg7a42a96bcf817gs"))))
+ (properties
+ `((upstream-name . "org.EcK12.eg.db")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)))
+ (home-page "https://bioconductor.org/packages/org.EcK12.eg.db")
+ (synopsis "Genome wide annotation for E coli strain K12")
+ (description
+ "This package provides genome wide annotation for E coli strain K12,
+primarily based on mapping using Entrez Gene identifiers. Entrez Gene is
+National Center for Biotechnology Information (NCBI)’s database for
+gene-specific information. Entrez Gene maintains records from genomes which
+have been completely sequenced, which have an active research community to
+submit gene-specific information, or which are scheduled for intense sequence
+analysis.")
+ (license license:artistic2.0)))
--
2.29.2