Build failure in vigra

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7 participants
  • Andreas Enge
  • Christopher Allan Webber
  • Danny Milosavljevic
  • Efraim Flashner
  • Leo Famulari
  • Ludovic Courtès
  • Ricardo Wurmus
Owner
unassigned
Submitted by
Danny Milosavljevic
Severity
normal
Merged with

Debbugs page

Danny Milosavljevic wrote 9 years ago
(address . bug-guix@gnu.org)
20160219020232.2f416584@scratchpost.org
/tmp/guix-build-vigra-1.10.0.drv-0/build
...
======================================================================
ERROR: test_arraytypes.testMethods
----------------------------------------------------------------------
Traceback (most recent call last):
File "/gnu/store/m71dy36xl5jcp1qgw9dkyab3yv9gpibx-python2-nose-1.3.7/lib/python2.7/site-packages/nose-1.3.7-py2.7.egg/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/tmp/guix-build-vigra-1.10.0.drv-0/build/vigranumpy/test/test_arraytypes.py", line 1331, in testMethods
nz = n.nonzero()
File "/tmp/guix-build-vigra-1.10.0.drv-0/build/vigranumpy/vigra/arraytypes.py", line 1285, in nonzero
res[k].axistags = AxisTags(AxisInfo(self.axistags[k]))
AttributeError: 'numpy.ndarray' object has no attribute 'axistags'

----------------------------------------------------------------------
Leo Famulari wrote 9 years ago
(name . Danny Milosavljevic)(address . dannym@scratchpost.org)(address . 22738@debbugs.gnu.org)
20160219035911.GA18399@jasmine
On Fri, Feb 19, 2016 at 02:02:32AM +0100, Danny Milosavljevic wrote:
Toggle quote (14 lines)
> /tmp/guix-build-vigra-1.10.0.drv-0/build
> ...
> ======================================================================
> ERROR: test_arraytypes.testMethods
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File "/gnu/store/m71dy36xl5jcp1qgw9dkyab3yv9gpibx-python2-nose-1.3.7/lib/python2.7/site-packages/nose-1.3.7-py2.7.egg/nose/case.py", line 197, in runTest
> self.test(*self.arg)
> File "/tmp/guix-build-vigra-1.10.0.drv-0/build/vigranumpy/test/test_arraytypes.py", line 1331, in testMethods
> nz = n.nonzero()
> File "/tmp/guix-build-vigra-1.10.0.drv-0/build/vigranumpy/vigra/arraytypes.py", line 1285, in nonzero
> res[k].axistags = AxisTags(AxisInfo(self.axistags[k]))
> AttributeError: 'numpy.ndarray' object has no attribute 'axistags'

It looks like we need this module 'vigranumpy':
Andreas Enge wrote 9 years ago
(name . Leo Famulari)(address . leo@famulari.name)
20160224103252.GA22799@solar
On Thu, Feb 18, 2016 at 10:59:11PM -0500, Leo Famulari wrote:
Toggle quote (3 lines)
> It looks like we need this module 'vigranumpy':
> https://ukoethe.github.io/vigra/doc-release/vigranumpy/index.html

This is part of the vigra source code. There should soon be a new vigra
release:
but it also failed its tests for me (in another place).

I made a bug report on the vigra mailing list:

Andreas
Ricardo Wurmus wrote 9 years ago
(name . Andreas Enge)(address . andreas@enge.fr)
idjr3g22vmp.fsf@bimsb-sys02.mdc-berlin.net
Andreas Enge <andreas@enge.fr> writes:

Toggle quote (12 lines)
> On Thu, Feb 18, 2016 at 10:59:11PM -0500, Leo Famulari wrote:
>> It looks like we need this module 'vigranumpy':
>> https://ukoethe.github.io/vigra/doc-release/vigranumpy/index.html
>
> This is part of the vigra source code. There should soon be a new vigra
> release:
> https://mailhost.informatik.uni-hamburg.de/pipermail/vigra/2016-February/001317.html
> but it also failed its tests for me (in another place).
>
> I made a bug report on the vigra mailing list:
> https://mailhost.informatik.uni-hamburg.de/pipermail/vigra/2016-February/001319.html

I’m told[1] that this is solved on branch “version-1-11-rc”, but I
haven’t been able to test this yet. Would anyone else like to try?

~~ Ricardo

Andreas Enge wrote 9 years ago
(name . Ricardo Wurmus)(address . ricardo.wurmus@mdc-berlin.de)
20160224115506.GA22927@solar
On Wed, Feb 24, 2016 at 12:30:38PM +0100, Ricardo Wurmus wrote:
Toggle quote (4 lines)
> I’m told[1] that this is solved on branch “version-1-11-rc”, but I
> haven’t been able to test this yet. Would anyone else like to try?
> [1]: https://github.com/ukoethe/vigra/issues/326#issuecomment-187669279

I have, but there is another problem there (see the second half
of my bug report).

Sorry I did not remember that you had opened an issue.

Andreas
Efraim Flashner wrote 9 years ago
(name . Andreas Enge)(address . andreas@enge.fr)
20160224215021.62129551@debian-netbook
On Wed, 24 Feb 2016 11:32:52 +0100
Andreas Enge <andreas@enge.fr> wrote:

Toggle quote (13 lines)
> On Thu, Feb 18, 2016 at 10:59:11PM -0500, Leo Famulari wrote:
> [...]
>
> This is part of the vigra source code. There should soon be a new vigra
> release:
> https://mailhost.informatik.uni-hamburg.de/pipermail/vigra/2016-February/001317.html
> but it also failed its tests for me (in another place).
>
> I made a bug report on the vigra mailing list:
> https://mailhost.informatik.uni-hamburg.de/pipermail/vigra/2016-February/001319.html
>
> Andreas

As a side note, once this builds libreoffice should build again. Currently
our version of libreoffice is vulnerable to cve-2016-{0794,0795} and should
be upgraded to 5.1.1. I didn't want to push the upgrade until I was sure it
would build correctly, but based on hydra's listed build times I'd be looking
at ~20 hours, so I'm not a good one to push that update when it comes.

--
Efraim Flashner <efraim@flashner.co.il> אפרים פלשנר
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Christopher Allan Webber wrote 9 years ago
(name . Andreas Enge)(address . andreas@enge.fr)
87d1rcskal.fsf@dustycloud.org
Andreas Enge writes:

Toggle quote (14 lines)
> On Thu, Feb 18, 2016 at 10:59:11PM -0500, Leo Famulari wrote:
>> It looks like we need this module 'vigranumpy':
>> https://ukoethe.github.io/vigra/doc-release/vigranumpy/index.html
>
> This is part of the vigra source code. There should soon be a new vigra
> release:
> https://mailhost.informatik.uni-hamburg.de/pipermail/vigra/2016-February/001317.html
> but it also failed its tests for me (in another place).
>
> I made a bug report on the vigra mailing list:
> https://mailhost.informatik.uni-hamburg.de/pipermail/vigra/2016-February/001319.html
>
> Andreas

It looks like this is fixed:

Is it possible to get an updated version of this package in, then?
Ludovic Courtès wrote 9 years ago
(name . Andreas Enge)(address . andreas@enge.fr)
87lh57t09g.fsf@gnu.org
Hi,

Did the update in 019b38758c3895d80a27610d6488ae59455465d6 (March 17)
fix it?

(There are currently no substitutes for this on x86_64.)

Ludo’.
Ludovic Courtès wrote 9 years ago
control message for bug #22738
(address . control@debbugs.gnu.org)
87k2krt07j.fsf@gnu.org
merge 22738 22653
Leo Famulari wrote 9 years ago
Re: bug#22738: Build failure in vigra
(name . Ludovic Courtès)(address . ludo@gnu.org)
20160327223440.GA19730@jasmine
On Fri, Mar 25, 2016 at 09:44:27AM +0100, Ludovic Court�s wrote:
Toggle quote (7 lines)
> Hi,
>
> Did the update in 019b38758c3895d80a27610d6488ae59455465d6 (March 17)
> fix it?
>
> (There are currently no substitutes for this on x86_64.)

From the 'fix-letsencrypt' branch on Savannah (which includes that
commit), it works for me on x86_64, but when cross-building to i686, the
test suite fails with:

---
Entering test suite GraphAlgorithmTestSuite

Failure in GraphAlgorithmTest::testEdgeWeightComputation()
Assertion failed: Sequences differ at index 5 [4.24264 != 4.24264]
(/tmp/guix-build-vigra-1.11.0.drv-0/vigra-1.11.0/test/graph_algorithm/test.cxx:543)

1 of 6 tests failed in test suite GraphAlgorithmTestSuite
---

So, 4.24264 != 4.24264?
Ludovic Courtès wrote 9 years ago
(name . Christopher Allan Webber)(address . cwebber@dustycloud.org)
87twhb2xf2.fsf@gnu.org
Vigra builds fine now, presumably since commit
019b38758c3895d80a27610d6488ae59455465d6 by Andreas, so closing this
bug.

Ludo’.
?
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