From debbugs-submit-bounces@debbugs.gnu.org Sun Jan 29 08:12:51 2023 Received: (at 61148) by debbugs.gnu.org; 29 Jan 2023 13:12:51 +0000 Received: from localhost ([127.0.0.1]:42423 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pM7UI-0003YX-J1 for submit@debbugs.gnu.org; Sun, 29 Jan 2023 08:12:50 -0500 Received: from mail-ej1-f51.google.com ([209.85.218.51]:36557) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pM7UG-0003YC-UK for 61148@debbugs.gnu.org; Sun, 29 Jan 2023 08:12:49 -0500 Received: by mail-ej1-f51.google.com with SMTP id kt14so24986212ejc.3 for <61148@debbugs.gnu.org>; Sun, 29 Jan 2023 05:12:48 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:sender:from:to:cc:subject:date :message-id:reply-to; bh=3AsLpxDeV25H4eZflOnf1flD4aeJ9FI3BgMFmWDDlug=; b=EjwAfPk9xNKk9YUpAX4Ol5Mcs4VUcewtY9IG2ZoZUBrlwl06EF5aHPbXuDPe9tmOrg KUC6HSjalxKhICUkGFNd3dhS1iWFgtMC0Q0DeaKEzsEueXEEfSNToQ0gtqdtEDt0F9bR EKKWmiGg+E+/SXM2oAHOG3vvsjFH/DaV5+jT626YdZdpHr3TODoYelGg/cO1u8W3LS1v LhtLrTQ3HDGk+bcThsf5uk+9vfoINcy7O5d4t6VPhRwBLZQqG9pODTkhEY/9g6oOrq2G vDeaak/j/AirL8QDtmsblZTAKo4TudkhH9Dv722dalVacaqKELOtoXdgEnEgtpjR9HGT z/OA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:sender:x-gm-message-state:from :to:cc:subject:date:message-id:reply-to; bh=3AsLpxDeV25H4eZflOnf1flD4aeJ9FI3BgMFmWDDlug=; b=to79b4MOVZuq3DTDr4JHR+mVyTTKVimTf6BJVg1G2yknrKLNuFm9i6v9fZxRtY2OYm 1Bv3sFkbsU5+fk2j81y1Yc0jvdFZOX/hrJVIP3mSdlWqldBNaEtkC4y+2hKfG1wejafu JEbGjAGuAELzmHQG828jFuF+c7oIknHH4iPi1o851rC0R7PDh2EEuhb98UZJEjuJKEuw KRQmK3VBGQAgvT+Mwp6bsgazbCFUcc4/IQxtqzaZY6itUTN7I3bqElUkVOmMuj0Tms9A aS6YJGoTX+o2HELhAuDMHuRi6p3fcDUTW/GY4oWe6GwY9hSRwkrrdNoN8k7djCwkBMsW yWuQ== X-Gm-Message-State: AO0yUKUJLHDDFwkrpFdYhO3eIhEB6yqIJL69w68F+VdFpD9EB4Dr2EDu huGKkS7827BSOTU9dGNOiZRfHfv9GfB1+Q== X-Google-Smtp-Source: AK7set9/fOHjDjpF2SCWoxboNc4vY45+Sp2dGReO9Cd+JFE6rViJLB2OegdQtdrQOswfGRZHQu/8iw== X-Received: by 2002:a17:906:171a:b0:878:69bc:2a8 with SMTP id c26-20020a170906171a00b0087869bc02a8mr12646640eje.69.1674997961717; Sun, 29 Jan 2023 05:12:41 -0800 (PST) Received: from localhost ([141.226.15.115]) by smtp.gmail.com with ESMTPSA id gn19-20020a1709070d1300b008512e1379dbsm5429176ejc.171.2023.01.29.05.12.40 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Sun, 29 Jan 2023 05:12:41 -0800 (PST) From: Efraim Flashner To: 61148@debbugs.gnu.org Subject: [PATCH 1/5] gnu: intervaltree: Update to 0.1-1.aa59377. Date: Sun, 29 Jan 2023 15:12:34 +0200 Message-Id: <4fd1568af1aa4bafb18a1efbcdfd084ca6b18711.1674997469.git.efraim@flashner.co.il> X-Mailer: git-send-email 2.39.1 In-Reply-To: References: MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.3 (/) X-Debbugs-Envelope-To: 61148 Cc: Efraim Flashner X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.7 (/) * gnu/packages/bioinformatics.scm (intervaltree): Update to 0.1-1.aa59377. [arguments]: Fix cross-compiling. --- gnu/packages/bioinformatics.scm | 17 ++++++++++------- 1 file changed, 10 insertions(+), 7 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 8c75607a65..5cea726f8e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13632,10 +13632,10 @@ (define-public gffcompare license:artistic2.0))))) ;license for gclib (define-public intervaltree - (let ((commit "b90527f9e6d51cd36ecbb50429e4524d3a418ea5")) + (let ((commit "aa5937755000f1cd007402d03b6f7ce4427c5d21")) (package (name "intervaltree") - (version (git-version "0.0.0" "1" commit)) + (version (git-version "0.1" "1" commit)) (source (origin (method git-fetch) @@ -13644,15 +13644,18 @@ (define-public intervaltree (commit commit))) (file-name (git-file-name name version)) (sha256 - (base32 "0rgv6q5fl4x5d74n6p5wvdna6zmbdbqpb4jqqh6vq3670gn08xad")))) + (base32 "0p9aphy6sc01dg67xzqpnhvjmk21xa380bpfbkz24a23s6krhjwl")))) (build-system gnu-build-system) (arguments - `(#:tests? #f ; No tests. + (list + #:tests? #f ; No tests. #:make-flags - ,#~(list (string-append "PREFIX=" #$output) "DESTDIR=\"\"") + #~(list (string-append "PREFIX=" #$output) + (string-append "CXX=" #$(cxx-for-target)) + "DESTDIR=") #:phases - (modify-phases %standard-phases - (delete 'configure)))) ; There is no configure phase. + #~(modify-phases %standard-phases + (delete 'configure)))) ; There is no configure phase. (home-page "https://github.com/ekg/intervaltree") (synopsis "Minimal C++ interval tree implementation") (description "An interval tree can be used to efficiently find a set of -- Efraim Flashner אפרים פלשנר GPG key = A28B F40C 3E55 1372 662D 14F7 41AA E7DC CA3D 8351 Confidentiality cannot be guaranteed on emails sent or received unencrypted