From debbugs-submit-bounces@debbugs.gnu.org Tue Mar 16 12:36:24 2021 Received: (at 47171) by debbugs.gnu.org; 16 Mar 2021 16:36:24 +0000 Received: from localhost ([127.0.0.1]:40879 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lMCgB-0003PP-Oo for submit@debbugs.gnu.org; Tue, 16 Mar 2021 12:36:24 -0400 Received: from mail-qk1-f180.google.com ([209.85.222.180]:46086) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lMCg9-0003P9-MH for 47171@debbugs.gnu.org; Tue, 16 Mar 2021 12:36:23 -0400 Received: by mail-qk1-f180.google.com with SMTP id a9so35815027qkn.13 for <47171@debbugs.gnu.org>; Tue, 16 Mar 2021 09:36:21 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=mime-version:references:in-reply-to:from:date:message-id:subject:to :cc:content-transfer-encoding; bh=x4RKLPdIbTVZdJ4RVS9EmPNDts0VGFcZoi7jIZKvLgE=; b=Yi27XlV6Mes+EACclz5wtzzHNgtI4mdu763j3Xl5mlUxTdsUy10Od4VBE7ecY84CTa lp0VD3SI6QR5kwD4xsAP+eD30j/XQ492QwTvMFXmDPeXWwC+Rb5vg+oPgWUPnEyB7Yni rJAvciczw15lDYssZLsGoQ0cwp3KteMAxROKY+uhrB+5TdDI4qFrIdnvzFAbrEoPYElI j5NhRLpozTWGQINHYl3N9Zf8DNqwGBd3SJdd/4nhD/Yc6Zd3243ZGWFla99ZhllLIFiF M6GBi7M9gUk/K8ZB7pytSm3NCP8wmImJpw9ZVA4dGDvFwuCYugJBZ5T5dbltit1OgqeJ Uv3g== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:mime-version:references:in-reply-to:from:date :message-id:subject:to:cc:content-transfer-encoding; bh=x4RKLPdIbTVZdJ4RVS9EmPNDts0VGFcZoi7jIZKvLgE=; b=LDcqX07o5bi+LAY7BVUEmlXMR3xUrUQtsyVOdRuuyTEXdfsR4KfFxbmvbAoqWwAbfH LO6laDjrfCfeQ5qmugd78trhL3YIMP5gq0MSdcnxSWzhYKOCjfyoxuni5SyxkmyyUk1t taKZ7hZWKIdl4myqVG9S50GMCaick/K4slV41LlNdmFsd5VMqkMmse4SztpD34/S+m++ c6puJaw0jgeUtud6Cxd3FOOOxXl82mnWLCIRjXug3WEYbNX5rRQvnhDZHNPapJGmuLPS BlZ7RYs9CW3SfcMS4E+EmEJpz/f2QgbSMoDAAPnVbcvFAh3wUdVdCjzP/qJr2+nh6nck jZtg== X-Gm-Message-State: AOAM5335D2wcKIHOFcXH2JFjRhrHRn6KDA8DMsOtANjB3gEa1nyfxh9a FXqNngizM71v7f4EeTr40XLR0GjeVwqiiHLKLvWq2qfe X-Google-Smtp-Source: ABdhPJxt/aJBvTLYYEJW+BNDN3TCTzKXj6y9Yu0dogwbVFEDnUvpqJ3Vke5GdRmYBDW/GM0N2Em64t+N/MVpwgqLL0E= X-Received: by 2002:a37:b807:: with SMTP id i7mr478496qkf.126.1615912576094; Tue, 16 Mar 2021 09:36:16 -0700 (PDT) MIME-Version: 1.0 References: <20210315180714.8233-1-zimon.toutoune@gmail.com> <87pn00m4ig.fsf@elephly.net> <87h7lbme0c.fsf@elephly.net> <87eegfm689.fsf@elephly.net> In-Reply-To: <87eegfm689.fsf@elephly.net> From: zimoun Date: Tue, 16 Mar 2021 17:36:04 +0100 Message-ID: Subject: Re: bug#47171: [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor). To: Ricardo Wurmus Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 47171 Cc: 47171@debbugs.gnu.org, Leo Famulari X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) On Tue, 16 Mar 2021 at 17:08, Ricardo Wurmus wrote: > > Therefore, the fix is to move the CRAN r-bisquerna and r-absfiltergsea > > packages from (gnu packages cran) to (gnu packages bioconductor) > > because they depend on the Bioconductor package r-biobase (and > > r-limma). Right? > > Correct. We don=E2=80=99t want any CRAN packages to depend on Bioconduct= or > things. When this is unavoidable, though, we move them to (gnu packages > bioconductor) with a comment. Ok. > > How do I proceed? Submit a patch moving these 2 packages and then > > another patch reverting the revert? > > Sounds good. (You could do this all in the same issue.) By the same issue, do you mean the same guix-patches number? Or the same commit? Cheers, simon