From debbugs-submit-bounces@debbugs.gnu.org Fri Sep 11 14:09:27 2020 Received: (at 43345) by debbugs.gnu.org; 11 Sep 2020 18:09:27 +0000 Received: from localhost ([127.0.0.1]:45418 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kGnUF-0005Mf-3u for submit@debbugs.gnu.org; Fri, 11 Sep 2020 14:09:27 -0400 Received: from mail-wr1-f45.google.com ([209.85.221.45]:36055) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kGnTx-0005KD-68 for 43345@debbugs.gnu.org; Fri, 11 Sep 2020 14:09:09 -0400 Received: by mail-wr1-f45.google.com with SMTP id z1so12348669wrt.3 for <43345@debbugs.gnu.org>; Fri, 11 Sep 2020 11:09:09 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=2AnlDBqtqG+0yS5rK5xS437Taon2RE/xOGIic80J59g=; b=qiNui6wkJyimKOVU5h4CeyU5u1c83PnzxPNsN+4TIdt0+pxaeYi31/OCOjV5/WzhN3 hr/BBZx04S0MT3q7p0f+p1X3c5nzH52K55LZOYDes1yBiN18gv7h1WqLOzDGwuwqsXIQ bkhNQvlI7pBFFrQgwK0Kdp4qroi4PKvJ0e5ik1REHabicBHWHiOnw54IFcAdO4CM6JRU qlffuDFhRcavhe8HLvpH7bghyxX/p9sMFLoCBoNiWhofhkIR7VWQ8Y8icwAbTxBYkWLl y0OptjpnrukUNoBeq3vu+S1K5mZZH3c926Zt3UZQ251gfPfRpecvnaltF7e55ahb4gtP rjUg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=2AnlDBqtqG+0yS5rK5xS437Taon2RE/xOGIic80J59g=; b=t3sEHF7T8Bowo4i+TqZq9DERNZNn0iX+exI6jtmUVezBj5UhiMP6aBDzKAzq1ud0Be uiiHMV1nQBmF16o+o+18zrHBxxwtoNeGA7lN3ghtCc+zDzssFdAoHC0KTHaJQE3VN8kc RalSsouyJav63YeU94bJynJt4QP8jL4gC7knu8nCd73VjkRPFGy7+SVQD1Qlq11PfmzP +zUyzLPWM5cX3bpgt3gO8Ecm1FWjZ4a9460h6xqIImu9XUWOc/qYjUWF0VLZw7RE52gx a0wEoV5JNYdtBQ2Wwqsktrlr50spILAy3+XbvIFrmNIRhXh9Fi0cBzzPCjPr4a4nUIjo n3Fg== X-Gm-Message-State: AOAM533oooRIfDmSqivO6+3gaY7qVHdfnbC9L4U69cWL6YxC7QxiVkcK IufTcAikw1icHgLPMghPbFZj4MYhvOM= X-Google-Smtp-Source: ABdhPJwBerhcT1H7dIWXao5A8mz5VRJU5TVsNEwWtfHZsiBjDLIkkzc4rcqkUHu7oZbDaaCs1Gp6lg== X-Received: by 2002:a5d:6acf:: with SMTP id u15mr3169544wrw.221.1599847743360; Fri, 11 Sep 2020 11:09:03 -0700 (PDT) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id y1sm5914005wmd.22.2020.09.11.11.09.02 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Fri, 11 Sep 2020 11:09:02 -0700 (PDT) From: zimoun To: 43345@debbugs.gnu.org Subject: [PATCH 10/12] gnu: r-phangorn: Move to (gnu packages cran). Date: Fri, 11 Sep 2020 20:08:49 +0200 Message-Id: <20200911180849.12582-12-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.28.0 In-Reply-To: <20200911180849.12582-1-zimon.toutoune@gmail.com> References: <20200911180849.12582-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 43345 Cc: zimoun X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/bioinformatics.scm (r-phangorn): Move from here ... * gnu/packages/cran.scm (r-phangorn): ... to here. --- gnu/packages/bioinformatics.scm | 28 ---------------------------- gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++ 2 files changed, 28 insertions(+), 28 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a6505099fc..bec6c1dc4a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10936,34 +10936,6 @@ are optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized.") (license license:expat))) -(define-public r-phangorn - (package - (name "r-phangorn") - (version "2.5.5") - (source - (origin - (method url-fetch) - (uri (cran-uri "phangorn" version)) - (sha256 - (base32 - "0ihkaykqjmf80d8wrk3saphxvnv58zma6pd13633bd3cwanc33f5")))) - (build-system r-build-system) - (propagated-inputs - `(("r-ape" ,r-ape) - ("r-fastmatch" ,r-fastmatch) - ("r-igraph" ,r-igraph) - ("r-magrittr" ,r-magrittr) - ("r-matrix" ,r-matrix) - ("r-quadprog" ,r-quadprog) - ("r-rcpp" ,r-rcpp))) - (home-page "https://github.com/KlausVigo/phangorn") - (synopsis "Phylogenetic analysis in R") - (description - "Phangorn is a package for phylogenetic analysis in R. It supports -estimation of phylogenetic trees and networks using Maximum Likelihood, -Maximum Parsimony, distance methods and Hadamard conjugation.") - (license license:gpl2+))) - (define-public r-dropbead (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247") (revision "2")) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8b2a5fc1dc..140ce11aac 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -23867,3 +23867,31 @@ dimensionality reduction; PCA, ICA, t-SNE, standard unsupervised clustering algorithms; density clustering, hierarchical clustering, k-means, and the discovery of differentially expressed genes and markers.") (license license:gpl3))) + +(define-public r-phangorn + (package + (name "r-phangorn") + (version "2.5.5") + (source + (origin + (method url-fetch) + (uri (cran-uri "phangorn" version)) + (sha256 + (base32 + "0ihkaykqjmf80d8wrk3saphxvnv58zma6pd13633bd3cwanc33f5")))) + (build-system r-build-system) + (propagated-inputs + `(("r-ape" ,r-ape) + ("r-fastmatch" ,r-fastmatch) + ("r-igraph" ,r-igraph) + ("r-magrittr" ,r-magrittr) + ("r-matrix" ,r-matrix) + ("r-quadprog" ,r-quadprog) + ("r-rcpp" ,r-rcpp))) + (home-page "https://github.com/KlausVigo/phangorn") + (synopsis "Phylogenetic analysis in R") + (description + "Phangorn is a package for phylogenetic analysis in R. It supports +estimation of phylogenetic trees and networks using Maximum Likelihood, +Maximum Parsimony, distance methods and Hadamard conjugation.") + (license license:gpl2+))) -- 2.28.0