[PATCH 0/1] Do not propagate cwltool inputs.

DoneSubmitted by Arun Isaac.
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2 participants
  • Arun Isaac
  • Ludovic Courtès
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Arun Isaac wrote on 7 May 11:34 +0200
(address . guix-patches@gnu.org)(name . Arun Isaac)(address . arunisaac@systemreboot.net)
20220507093443.4214-1-arunisaac@systemreboot.net
cwltool is a command-line tool, not a python library. So, its dependencies
should be regular inputs, not propagated inputs. In fact, as it stands
currently, installing cwltool fails due to a package conflict.

Toggle snippet (15 lines)
$ guix install cwltool
The following package would be installed:
cwltool 3.1.20220119140128

guix install: error: profile contains conflicting entries for python-rdflib
guix install: error: first entry: python-rdflib@5.0.0 /gnu/store/lxy384l7avd0q4dmfs0zywllb9221y7x-python-rdflib-5.0.0
guix install: error: ... propagated from python-prov@2.0.0
guix install: error: ... propagated from cwltool@3.1.20220119140128
guix install: error: second entry: python-rdflib@6.1.1 /gnu/store/2f88f2w44zsvmx8m6ymp1fywiw1h379x-python-rdflib-6.1.1
guix install: error: ... propagated from python-rdflib-jsonld@0.6.2
guix install: error: ... propagated from python-schema-salad@8.2.20211116214159
guix install: error: ... propagated from cwltool@3.1.20220119140128
hint: You cannot have two different versions or variants of `cwltool' in the same profile.

Arun Isaac (1):
gnu: cwltool: Do not propagate inputs.

gnu/packages/bioinformatics.scm | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)

--
2.36.0
L
L
Ludovic Courtès wrote on 11 May 00:48 +0200
(name . Arun Isaac)(address . arunisaac@systemreboot.net)(address . 55298@debbugs.gnu.org)
87a6bpovg2.fsf@gnu.org
Hi,

Arun Isaac <arunisaac@systemreboot.net> skribis:

Toggle quote (24 lines)
> cwltool is a command-line tool, not a python library. So, its dependencies
> should be regular inputs, not propagated inputs. In fact, as it stands
> currently, installing cwltool fails due to a package conflict.
>
> $ guix install cwltool
> The following package would be installed:
> cwltool 3.1.20220119140128
>
> guix install: error: profile contains conflicting entries for python-rdflib
> guix install: error: first entry: python-rdflib@5.0.0 /gnu/store/lxy384l7avd0q4dmfs0zywllb9221y7x-python-rdflib-5.0.0
> guix install: error: ... propagated from python-prov@2.0.0
> guix install: error: ... propagated from cwltool@3.1.20220119140128
> guix install: error: second entry: python-rdflib@6.1.1 /gnu/store/2f88f2w44zsvmx8m6ymp1fywiw1h379x-python-rdflib-6.1.1
> guix install: error: ... propagated from python-rdflib-jsonld@0.6.2
> guix install: error: ... propagated from python-schema-salad@8.2.20211116214159
> guix install: error: ... propagated from cwltool@3.1.20220119140128
> hint: You cannot have two different versions or variants of `cwltool' in the same profile.
>
> Arun Isaac (1):
> gnu: cwltool: Do not propagate inputs.
>
> gnu/packages/bioinformatics.scm | 2 +-
> 1 file changed, 1 insertion(+), 1 deletion(-)

You forgot to send the actual patch, but I think removing propagated
inputs in this case is a good idea. Got for it!

Thanks,
Ludo’.
A
A
Arun Isaac wrote on 11 May 07:30 +0200
(name . Ludovic Courtès)(address . ludo@gnu.org)(address . 55298-done@debbugs.gnu.org)
87zgjo3abu.fsf@systemreboot.net
Toggle quote (2 lines)
> You forgot to send the actual patch,

Oops, sorry!

Toggle quote (3 lines)
> but I think removing propagated inputs in this case is a good idea.
> Got for it!

Done, thank you!
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