[PATCH] gnu: Update blast+ to 2.11.0.

DoneSubmitted by Roel Janssen.
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2 participants
  • Leo Famulari
  • Roel Janssen
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Roel Janssen wrote on 16 Apr 13:22 +0200
(address . guix-patches@gnu.org)
d110c65581b1b40e1ba3524732ffd17b66b0011b.camel@gnu.org
Hi Guix,
Here's a patch to update blast+ to 2.11.0.
Kind regards,Roel Janssen
From 92d8f8602a285fc3ed61656c314a697cd87ae4f4 Mon Sep 17 00:00:00 2001From: Roel Janssen <roel@gnu.org>Date: Fri, 16 Apr 2021 13:20:53 +0200Subject: [PATCH] gnu: Update blast+ to 2.11.0.
* gnu/packages/bioinformatics.scm (blast+): Update to 2.11.0.--- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-)
Toggle diff (24 lines)diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scmindex 41ef4cd513..31205c473a 100644--- a/gnu/packages/bioinformatics.scm+++ b/gnu/packages/bioinformatics.scm@@ -1363,7 +1363,7 @@ package provides command line tools using the Bio++ library.") (define-public blast+ (package (name "blast+")- (version "2.10.1")+ (version "2.11.0") (source (origin (method url-fetch) (uri (string-append@@ -1371,7 +1371,7 @@ package provides command line tools using the Bio++ library.") version "/ncbi-blast-" version "+-src.tar.gz")) (sha256 (base32- "11kvrrl0mcwww6530r55hccpg3x3msmhr3051fwnjbq8rzg2j1qi"))+ "0m0r9vkw631ky1za1wilsfk9k9spwqh22nkrb9a57rbwmrc1i3nq")) (modules '((guix build utils))) (snippet '(begin-- 2.30.2
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Leo Famulari wrote on 16 Apr 18:37 +0200
(name . Roel Janssen)(address . roel@gnu.org)(address . 47826@debbugs.gnu.org)
YHm9PrPcbgRFTsOY@jasmine.lan
On Fri, Apr 16, 2021 at 01:22:59PM +0200, Roel Janssen wrote:
Toggle quote (15 lines)> Hi Guix,> > Here's a patch to update blast+ to 2.11.0.> > Kind regards,> Roel Janssen>
> From 92d8f8602a285fc3ed61656c314a697cd87ae4f4 Mon Sep 17 00:00:00 2001> From: Roel Janssen <roel@gnu.org>> Date: Fri, 16 Apr 2021 13:20:53 +0200> Subject: [PATCH] gnu: Update blast+ to 2.11.0.> > * gnu/packages/bioinformatics.scm (blast+): Update to 2.11.0.
LGTM, assuming the packages the depend on it still build.
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Roel Janssen wrote on 16 Apr 20:14 +0200
(name . Leo Famulari)(address . leo@famulari.name)(address . 47826@debbugs.gnu.org)
daec05a12651971815b6101a89f2d75d5cfcf366.camel@gnu.org
Hi Leo,
On Fri, 2021-04-16 at 12:37 -0400, Leo Famulari wrote:
Toggle quote (20 lines)> On Fri, Apr 16, 2021 at 01:22:59PM +0200, Roel Janssen wrote:> > Hi Guix,> > > > Here's a patch to update blast+ to 2.11.0.> > > > Kind regards,> > Roel Janssen> > > > > From 92d8f8602a285fc3ed61656c314a697cd87ae4f4 Mon Sep 17 00:00:00> > 2001> > From: Roel Janssen <roel@gnu.org>> > Date: Fri, 16 Apr 2021 13:20:53 +0200> > Subject: [PATCH] gnu: Update blast+ to 2.11.0.> > > > * gnu/packages/bioinformatics.scm (blast+): Update to 2.11.0.> > LGTM, assuming the packages the depend on it still build.>
Let's see if I got this right:$ ./pre-inst-env guix refresh --list-dependent blast+/home/roel/Programming/guix/gnu/packages/bioinformatics.goBuilding the following 2 packages would ensure 2 dependent packages arerebuilt: roary@3.12.0 proteinortho@6.0.14
So I built roary and proteinortho with the blast+ patch applied, andboth build fine.
Can I conclude from this that packages depending on blast+ still buildfine?
Kind regards,Roel Janssen
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Leo Famulari wrote on 16 Apr 20:22 +0200
(name . Roel Janssen)(address . roel@gnu.org)(address . 47826@debbugs.gnu.org)
YHnV4FMN5vTikvJA@jasmine.lan
On Fri, Apr 16, 2021 at 08:14:27PM +0200, Roel Janssen wrote:
Toggle quote (12 lines)> Let's see if I got this right:> $ ./pre-inst-env guix refresh --list-dependent blast+> /home/roel/Programming/guix/gnu/packages/bioinformatics.go> Building the following 2 packages would ensure 2 dependent packages are> rebuilt: roary@3.12.0 proteinortho@6.0.14> > So I built roary and proteinortho with the blast+ patch applied, and> both build fine.> > Can I conclude from this that packages depending on blast+ still build> fine?
Yes, exactly! Thanks for testing and please push :)
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Roel Janssen wrote on 16 Apr 20:58 +0200
(name . Leo Famulari)(address . leo@famulari.name)(address . 47826-done@debbugs.gnu.org)
26f83a2fd74411cd8da7f1aa0f36dfe44e115f33.camel@gnu.org
On Fri, 2021-04-16 at 14:22 -0400, Leo Famulari wrote:
Toggle quote (19 lines)> On Fri, Apr 16, 2021 at 08:14:27PM +0200, Roel Janssen wrote:> > Let's see if I got this right:> > $ ./pre-inst-env guix refresh --list-dependent blast+> > /home/roel/Programming/guix/gnu/packages/bioinformatics.go> > Building the following 2 packages would ensure 2 dependent packages> > are> > rebuilt: roary@3.12.0 proteinortho@6.0.14> > > > So I built roary and proteinortho with the blast+ patch applied,> > and> > both build fine.> > > > Can I conclude from this that packages depending on blast+ still> > build> > fine?> > Yes, exactly! Thanks for testing and please push :)>
Thank you for your help!
I pushed this patch in c3926120ba5ea76f531541b7926ccb6739575e0e.
Kind regards,Roel Janssen
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