(address . guix-patches@gnu.org)(address . rekado@elephly.net)
* gnu/packages/bioinformatics.scm (python-intervaltree): Update to 3.0.2.
[arguments]: Don't skip the tests.
---
It turns out I need python-intervaltree 3.0 as a dependency for one of
the packages I'm working on.
Cc: Ricardo - you added python-pygenometracks, the only dependent. Could
you re-test it, just in case?
gnu/packages/bioinformatics.scm | 14 ++++++++++----
1 file changed, 10 insertions(+), 4 deletions(-)
Toggle diff (41 lines)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index da3fe1d2c9..a8e4c830ae 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -16,6 +16,7 @@
;;; Copyright © 2019 Brian Leung <bkleung89@gmail.com>
;;; Copyright © 2019 Brett Gilio <brettg@gnu.org>
;;; Copyright © 2020 Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
+;;; Copyright © 2020 Jakub K?dzio?ka <kuba@kadziolka.net>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -13548,17 +13549,22 @@ allowing the insertion of arbitrary types into the tree.")
(define-public python-intervaltree
(package
(name "python-intervaltree")
- (version "2.1.0")
+ (version "3.0.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "intervaltree" version))
(sha256
(base32
- "02w191m9zxkcjqr1kv2slxvhymwhj3jnsyy3a28b837pi15q19dc"))))
+ "0wz234g6irlm4hivs2qzmnywk0ss06ckagwh15nflkyb3p462kyb"))))
(build-system python-build-system)
- ;; FIXME: error when collecting tests
- (arguments '(#:tests? #f))
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-before 'check 'import-mismatch-error-workaround
+ (lambda _
+ (setenv "PY_IGNORE_IMPORTMISMATCH" "1")
+ #t)))))
(propagated-inputs
`(("python-sortedcontainers" ,python-sortedcontainers)))
(native-inputs
--
2.26.0