[PATCH] gnu: Add r-transphylo

OpenSubmitted by Antoine Côté.
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  • Antoine Côté
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Antoine Côté wrote 7 days ago
(address . guix-patches@gnu.org)(name . Antoine Côté)(address . antoine.cote@posteo.net)
20200629150517.28452-1-antoine.cote@posteo.net
--- gnu/packages/cran.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+)
Toggle diff (42 lines)diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scmindex 70af2d30f0..749eee7856 100644--- a/gnu/packages/cran.scm+++ b/gnu/packages/cran.scm@@ -21,6 +21,7 @@ ;;; Copyright © 2020 Danjela Lura <danielaluraa@gmail.com> ;;; Copyright © 2020 Naga Malleswari <nagamalli@riseup.net> ;;; Copyright © 2020 Eric Brown <ecbrown@ericcbrown.com>+;;; Copyright © 2020 Antoine Côté <antoine.cote@posteo.net> ;;; ;;; This file is part of GNU Guix. ;;;@@ -22372,3 +22373,27 @@ using @dfn{SHAP} (Shapley additive explanation) visualization plots for and force plot. It relies on the @code{XGBoost} package to produce SHAP values.") (license license:expat)))++(define-public r-transphylo+ (package+ (name "r-transphylo")+ (version "1.4.4")+ (source+ (origin+ (method url-fetch)+ (uri (cran-uri "TransPhylo" version))+ (sha256+ (base32+ "1506c97y8dnhd0c38rgvmg70q0l3xmmn07mjglhnw7hi5n5y9mv9"))))+ (properties `((upstream-name . "TransPhylo")))+ (build-system r-build-system)+ (propagated-inputs+ `(("r-ape" ,r-ape) ("r-rcpp" ,r-rcpp)))+ (native-inputs `(("r-knitr" ,r-knitr)))+ (home-page+ "https://cran.r-project.org/web/packages/TransPhylo/")+ (synopsis+ "Inference of Transmission Tree from a Dated Phylogeny")+ (description+ "Inference of transmission tree from a dated phylogeny. Includes methods to simulate and analyse outbreaks. The methodology is described in Didelot et al. (2014) <doi:10.1093/molbev/msu121>, Didelot et al. (2017) <doi:10.1093/molbev/msw275>.")+ (license license:gpl2+)))-- 2.27.0
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